In the Together
modeling
preferences dialog, you can choose several options for separating diagram
elements. By default, Together stores diagram elements in a single file.
To open the preferences dialog, from the menubar, select Window > Preferences.
In the options list on the left, expand the Modeling node, and select the
File Storage tab.
Tip: You may wish to consider which design elements
within your project should be First Class Citizens before the team starts
each project. Otherwise you risk having design diagrams that contain a
mixture, as the separation presets only affect elements created after
the preset is changed.