Last updated on 2026-01-25 21:49:46 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.12 | 811.93 | 849.05 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | OK | ||||
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 69.00 | 1351.47 | 1420.47 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 59.00 | 1153.46 | 1212.46 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 39.00 | 582.00 | 621.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.49 | 732.84 | 786.33 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 33.01 | 730.59 | 763.60 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 530.00 | 567.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 128.00 | 136.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 26.00 | 716.00 | 742.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 674.00 | 728.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [118s/60s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-26 05:56:19.186901: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.187192: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.190349: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.196641: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.209111: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.209249: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.211662: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.217997: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.225566: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.225762: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.230493: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.245144: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.245592: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.252225: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.252395: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.256779: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.271727: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.272145: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.292768: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.292909: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.297296: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.330074: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.347532: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.347745: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.356901: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.436398: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.437584: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.472605: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.472763: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.475182: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.481285: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.488867: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.48906: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.493707: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.508671: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.509063: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.551519: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.551677: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.553946: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.560164: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.571581: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.571764: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.576171: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.590981: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.591393: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.611462: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.611631: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.614128: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.620602: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.63396: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.634159: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.638886: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.654233: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.65468: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.673225: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.673373: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.675798: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.68194: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.693683: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.693857: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.704374: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.719645: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.720173: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.741984: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.742142: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.744314: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.750506: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.762151: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.762333: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.766499: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.781404: embedding
> test_pipeop_isomap.R: 2026-01-26 05:56:19.781786: DONE
> test_pipeop_isomap.R: 2026-01-26 05:56:19.80388: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.804021: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.806393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.812654: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.833614: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.833779: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.836187: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.842111: Classical Scaling
> test_pipeop_isomap.R: 2026-01-26 05:56:19.848066: Isomap START
> test_pipeop_isomap.R: 2026-01-26 05:56:19.848192: constructing knn graph
> test_pipeop_isomap.R: 2026-01-26 05:56:19.855719: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-26 05:56:19.8622: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3982025')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [326s/459s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-25 14:54:39.097384: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:39.097934: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:39.107485: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:39.181323: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:39.323308: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:39.323619: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:39.355108: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:39.399701: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:39.4725: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:39.472941: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:39.536144: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:39.676183: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:39.677352: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:39.749107: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:39.749553: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:39.796598: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:39.941097: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:39.967063: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:40.185454: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:40.185762: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:40.222924: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:40.580983: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:40.681262: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:40.681713: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:40.790303: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:41.533765: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:41.578363: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:42.001325: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:42.001639: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:42.008961: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:42.077697: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:42.150642: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:42.151068: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:42.216496: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:42.368708: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:42.369874: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:42.731206: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:42.7315: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:42.766425: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:42.806976: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:42.953248: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:42.953687: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:42.996351: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:43.171861: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:43.204221: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:43.391846: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:43.392144: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:43.427615: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:43.495411: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:43.602641: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:43.603071: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:43.672979: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:43.826279: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:43.827417: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:44.083097: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:44.083405: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:44.115558: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:44.15759: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:44.296323: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:44.296757: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:44.333913: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:44.499329: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:44.500459: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:44.722418: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:44.722723: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:44.748819: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:44.835749: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:44.952386: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-25 14:54:44.953909: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:45.026196: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:45.14524: embedding
> test_pipeop_isomap.R: 2026-01-25 14:54:45.167489: DONE
> test_pipeop_isomap.R: 2026-01-25 14:54:45.388478: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:45.388772: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:45.395397: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:45.462298: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:45.674274: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:45.67484: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:45.703745: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:45.749869: Classical Scaling
> test_pipeop_isomap.R: 2026-01-25 14:54:45.818337: Isomap START
> test_pipeop_isomap.R: 2026-01-25 14:54:45.818639: constructing knn graph
> test_pipeop_isomap.R: 2026-01-25 14:54:45.850544: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-25 14:54:45.96569: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-23 21:16:27.219948: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.220987: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.236572: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.260744: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.378932: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.379508: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.387638: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.402754: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.446137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.447119: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.468526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.51888: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.520702: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.550695: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.551402: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.566254: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.61067: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:27.612635: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:27.744686: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.745308: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.765965: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:27.876698: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:27.9247: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:27.925702: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:27.98113: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.212569: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.217711: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.454488: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.455112: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.466487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.489004: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:28.542654: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.543563: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.567087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.616799: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:28.618684: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:28.879887: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:28.880703: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:28.893513: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:28.916254: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.00898: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.010139: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.033639: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.084773: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.0866: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225234: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.225898: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.238092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.260775: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.333826: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.334764: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.35337: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.39555: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.397577: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507543: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.507999: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.533037: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.552449: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627045: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.627846: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.64328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.689077: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:29.690683: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810192: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.810861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.823068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:29.845674: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:29.92462: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 21:16:29.925551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:29.949145: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.000386: embedding
> test_pipeop_isomap.R: 2026-01-23 21:16:30.00223: DONE
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140067: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.140706: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.167155: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.189673: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290376: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.290869: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.299982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.315442: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 21:16:30.34708: Isomap START
> test_pipeop_isomap.R: 2026-01-23 21:16:30.347551: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 21:16:30.357353: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 21:16:30.378585: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64