Last updated on 2026-01-28 13:50:59 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.5 | 7.59 | 829.34 | 836.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.5 | 4.34 | 556.80 | 561.14 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.5 | 14.00 | 1385.39 | 1399.39 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.5 | 12.00 | 1279.83 | 1291.83 | OK | |
| r-devel-windows-x86_64 | 1.4.5 | 10.00 | 552.00 | 562.00 | OK | |
| r-patched-linux-x86_64 | 1.4.4 | 8.25 | 789.19 | 797.44 | OK | |
| r-release-linux-x86_64 | 1.4.5 | 6.83 | 808.52 | 815.35 | OK | |
| r-release-macos-arm64 | 1.4.5 | 2.00 | 145.00 | 147.00 | OK | |
| r-release-macos-x86_64 | 1.4.5 | 5.00 | 659.00 | 664.00 | OK | |
| r-release-windows-x86_64 | 1.4.5 | 14.00 | 546.00 | 560.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.5 | 2.00 | 146.00 | 148.00 | OK | |
| r-oldrel-macos-x86_64 | 1.4.5 | 5.00 | 404.00 | 409.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.4.5 | 16.00 | 661.00 | 677.00 | OK |
Version: 1.4.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
Quitting from cohort-intersect.Rmd:22-36 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'duckdb'
---
Backtrace:
▆
1. ├─PatientProfiles::mockPatientProfiles(...)
2. │ └─CDMConnector::dbSource(...)
3. │ └─methods::is(con, "Pool")
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cohort-intersect.Rmd' failed with diagnostics:
there is no package called 'duckdb'
--- failed re-building ‘cohort-intersect.Rmd’
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from concept-intersect.Rmd:35-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::dplyr_quosures(...)
7. │ │ └─rlang::quos(..., .ignore_empty = "all")
8. │ └─base::colnames(x)
9. │ └─base::is.data.frame(x)
10. └─base::loadNamespace(x)
11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12. └─base (local) withOneRestart(expr, restarts[[1L]])
13. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘concept-intersect.Rmd’
--- re-building ‘demographics.rmd’ using rmarkdown
Quitting from demographics.rmd:19-28 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'duckdb'
---
Backtrace:
▆
1. └─base::library(duckdb)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'demographics.rmd' failed with diagnostics:
there is no package called 'duckdb'
--- failed re-building ‘demographics.rmd’
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise.Rmd:78-130 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::dplyr_quosures(...)
7. │ │ └─rlang::quos(..., .ignore_empty = "all")
8. │ └─base::colnames(x)
9. │ └─base::is.data.frame(x)
10. └─base::loadNamespace(x)
11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12. └─base (local) withOneRestart(expr, restarts[[1L]])
13. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘summarise.Rmd’
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from table-intersect.Rmd:34-57 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'arrow'
---
Backtrace:
▆
1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")
2. │ └─omock:::readTables(tmpFolder, cv)
3. │ └─omock:::castColumns(...)
4. │ ├─dplyr::filter(...)
5. │ ├─dplyr:::filter.data.frame(...)
6. │ │ └─dplyr:::dplyr_quosures(...)
7. │ │ └─rlang::quos(..., .ignore_empty = "all")
8. │ └─base::colnames(x)
9. │ └─base::is.data.frame(x)
10. └─base::loadNamespace(x)
11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12. └─base (local) withOneRestart(expr, restarts[[1L]])
13. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'table-intersect.Rmd' failed with diagnostics:
there is no package called 'arrow'
--- failed re-building ‘table-intersect.Rmd’
SUMMARY: processing the following files failed:
‘cohort-intersect.Rmd’ ‘concept-intersect.Rmd’ ‘demographics.rmd’
‘summarise.Rmd’ ‘table-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64