# Simulating Diversification Dynamics

## Documentation for package ‘paleobuddy’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

paleobuddy-package | paleobuddy: Simulating diversification dynamics
bd.sim | General rate Birth-Death simulation
bd.sim.traits | MuSSE simulation
bin.occurrences | Bin true occurrences into geologic intervals
binner | Bin occurrences in geologic intervals
co2 | Jurassic CO2 data
draw.sim | Draw a sim object
find.lineages | Separate a paleobuddy simulation into monophyletic clades
head.sim | Details, generics, and methods for the 'sim' class
is.sim | Details, generics, and methods for the 'sim' class
make.phylo | Phylogeny generating
make.rate | Create a flexible rate for birth-death or sampling simulations
paleobuddy | paleobuddy: Simulating diversification dynamics
phylo.to.sim | Converting a phylogeny in a paleobuddy object
plot.sim | Details, generics, and methods for the 'sim' class
print.sim | Details, generics, and methods for the 'sim' class
rexp.var | General rate exponential and Weibull waiting times
sample.clade | General rate fossil sampling
sample.clade.traits | Trait-dependent fossil sampling
sim | Details, generics, and methods for the 'sim' class
sim.counts | Details, generics, and methods for the 'sim' class
summary.sim | Details, generics, and methods for the 'sim' class
tail.sim | Details, generics, and methods for the 'sim' class
temp | Cenozoic temperature data
traits.summary | Summarizing trait data
var.rate.div | Expected diversity for general exponential rates