See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2024-11-19 08:32:26 -0500 (Tue, 19 Nov 2024).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (60584)
2	BiocGenerics (57630)
3	GenomeInfoDb (56891)
4	S4Vectors (56497)
5	zlibbioc (54052)
6	IRanges (53096)
7	XVector (49459)
8	Biobase (48991)
9	Biostrings (48065)
10	GenomicRanges (44548)
11	DelayedArray (42151)
12	BiocParallel (41709)
13	MatrixGenerics (39940)
14	SummarizedExperiment (39460)
15	S4Arrays (39111)
16	SparseArray (38518)
17	KEGGREST (36496)
18	AnnotationDbi (36401)
19	limma (33453)
20	BiocFileCache (26565)
21	Rhtslib (25201)
22	GenomicAlignments (24367)
23	edgeR (24207)
24	Rsamtools (24126)
25	Rhdf5lib (24064)

26	biomaRt (23501)
27	DESeq2 (22002)
28	ggtree (21474)
29	rtracklayer (21268)
30	treeio (20539)
31	rhdf5 (20364)
32	BiocIO (20146)
33	GenomicFeatures (19905)
34	rhdf5filters (19746)
35	clusterProfiler (19225)
36	DOSE (19183)
37	graph (18902)
38	GOSemSim (18342)
39	enrichplot (18329)
40	qvalue (18031)
41	annotate (17813)
42	UCSC.utils (17812)
43	fgsea (17761)
44	BSgenome (16746)
45	beachmat (16150)
46	DelayedMatrixStats (16127)
47	sparseMatrixStats (15792)
48	SingleCellExperiment (15713)
49	ComplexHeatmap (15354)
50	HDF5Array (14627)

51	preprocessCore (14252)
52	BiocSingular (12726)
53	multtest (12600)
54	ScaledMatrix (12519)
55	genefilter (12410)
56	VariantAnnotation (12286)
57	ProtGenerics (11948)
58	AnnotationHub (11818)
59	AnnotationFilter (11210)
60	BiocNeighbors (11046)
61	impute (10642)
62	ensembldb (10235)
63	GEOquery (9773)
64	Rgraphviz (9735)
65	scuttle (9564)
66	RBGL (9514)
67	GSEABase (9038)
68	affyio (8212)
69	affy (8115)
70	interactiveDisplayBase (7969)
71	ExperimentHub (7795)
72	sva (7526)
73	scater (7398)
74	GSVA (6818)
75	BiocBaseUtils (6644)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

A

	a4 (123)
	a4Base (184)
	a4Classif (149)
	a4Core (198)
	a4Preproc (202)
	a4Reporting (151)
	aads.rnai (1)
	ABAData (1)
	ABAEnrichment (20)
	abaenrichment (0)
	ABarray (117)
	abc (0)
	abc.data (1)
	abe (0)
	ABHgenotypeR (1)
	abif (1)
	abind (21)
	abseqR (80)
	ABSOLUTE (0)
	ABSSeq (144)
	acde (91)
	ACE (115)
	ace.fma (1)
	acepack (1)
	aCGH (250)
	ACME (121)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (1)
	ADaCGH2 (108)
	ADAM (222)
	ADAMgui (116)
	ADAPT (5)
	adaptest (11)
	AdaptGauss (1)
	adbcdrivermanager (1)
	adductData (1)
	adductomicsR (79)
	ade4 (3)
	adegenet (1)
	adegraphics (1)
	adehabitat (1)
	adehabitatLT (1)
	adephylo (1)
	ADGofTest (1)
	ADImpute (90)
	aditools (1)
	adjustedCurves (1)
	admiral (2)
	admiral.test (1)
	admiraldev (1)
	admiralonco (1)
	admiralophtha (1)
	admiralroche (1)
	admisc (10)
	admixtools (0)
	ADMM (0)
	adSplit (107)
	adverSCarial (56)
	AER (1)
	afex (2)
	affio (0)
	AffiXcan (78)
	affxparser (1656)
	affy (8115)
	Affy (1)
	affycomp (131)
	AffyCompatible (48)
	affyContam (153)
	affycoretools (419)
	affydata (3)
	AffyExpress (37)
	affyILM (111)
	affyio (8212)
	affylmGUI (131)
	affyPara (38)
	affypdnn (34)
	affyPLM (1105)
	affyplm (0)
	affyQCReport (41)
	AffyRNADegradation (93)
	AffyTiling (22)
	AGDEX (95)
	aggregateBioVar (88)
	aggregation (0)
	AGHmatrix (0)
	Agi4x44PreProcess (15)
	agilp (116)
	AgiMicroRna (164)
	agricolae (10)
	agridat (0)
	AHMassBank (69)
	AICcmodavg (1)
	aigoraFitMini (1)
	AIMS (427)
	AIPW (0)
	airpart (85)
	airr (1)
	airway (1)
	akima (1)
	alabama (0)
	alabaster (65)
	alabaster.base (1881)
	alabaster.bumpy (106)
	alabaster.files (59)
	alabaster.mae (110)
	alabaster.matrix (1845)
	alabaster.ranges (1780)
	alabaster.sce (651)
	alabaster.schemas (1630)
	alabaster.se (1714)
	alabaster.spatial (107)
	alabaster.string (123)
	alabaster.vcf (114)
	alakazam (1)
	ald (0)
	ALDEx2 (1211)
	aldvmm (1)
	alembic (0)
	alevinQC (104)
	AlgDesign (3)
	alkahest.generic (0)
	ALL (10)

	AllelicImbalance (127)
	alluvial (0)
	almanac (0)
	AlphaBeta (72)
	alphahull (0)
	AlphaMissenseR (45)
	alphashape3d (0)
	alphavantager (1)
	alpine (37)
	ALPS (10)
	AlpsNMR (86)
	alr3 (1)
	alr4 (0)
	alsace (24)
	altair (1)
	altcdfenvs (152)
	amap (1)
	AMARETTO (224)
	ambient (0)
	Amelia (2)
	AmesHousing (0)
	amgen.okta.client (1)
	amgsafetyvis (1)
	amlogger (1)
	AMOUNTAIN (117)
	amplican (107)
	ampliQueso (20)
	AnalysisPageServer (15)
	anamiR (12)
	Anaquin (80)
	ANCOMBC (1238)
	ANCOMBCs (1)
	AneuFinder (112)
	aneufinder (1)
	AneuFinderData (0)
	aneufinderdata (1)
	ANF (76)
	angrycell (1)
	animalcules (226)
	animation (1)
	annaffy (300)
	AnnBuilder (6)
	annbuilder (0)
	anndata (1)
	annmap (136)
	AnnoProbe (1)
	annotate (17813)
	annotation (0)
	AnnotationDbi (36401)
	annotationdbi (1)
	AnnotationFilter (11210)
	AnnotationForge (2265)
	AnnotationFuncs (31)
	AnnotationHub (11818)
	annotationhub (1)
	AnnotationHubData (384)
	annotationTools (154)
	annotatr (499)
	anota (116)
	anota2seq (99)
	anRichment (0)
	antaresProcessing (1)
	anticlust (1)
	antiProfiles (90)
	AnVIL (582)
	AnVILAz (17)
	AnVILBase (29)
	AnVILBilling (67)
	AnVILGCP (17)
	AnVILPublish (77)
	AnVILWorkflow (60)
	anytime (5)
	aod (2)
	APAlyzer (93)
	apcluster (1)
	apComplex (103)
	APCtools (1)
	ape (46)
	apeglm (3643)
	apexcharter (0)
	APL (220)
	apLCMS (1)
	aplot (47)
	appgen (1)
	applera (2)
	appreci8R (112)
	aqp (1)
	archive (1)
	ArchR (0)
	argparse (13)
	argparser (1)
	argus.DS.Credentials (3)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (3)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (1)
	argusDS.data.preparation2 (4)
	argusDS.data.visualisation (1)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (1)
	argusDS.distributions (1)
	argusDS.driver.importance (2)
	argusDS.FCUtilities (1)
	argusDS.FZ.SourceData (1)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (1)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (3)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (1)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (1)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (2)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (2)
	argusDS.shiny.utils (1)
	argusDS.signal.backtesting (1)

	argusDS.signal.dataprep (2)
	argusDS.signal.generation (1)
	argusDS.smoothers (1)
	argusDS.spread.trading.utils (2)
	argusDS.Studio.APC (1)
	argusDS.Studio.FC (1)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (3)
	argusDS.Studio.utils (3)
	argusDS.tabulator (3)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (1)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arm (4)
	aroma.affymetrix (7)
	aroma.apd (8)
	aroma.core (8)
	aroma.light (2045)
	ArrayExpress (460)
	arrayexpress (0)
	ArrayExpressHTS (33)
	arrayhelpers (1)
	arrayMagic (6)
	arrayMvout (94)
	arrayop (1)
	arrayQCplot (2)
	arrayQuality (161)
	arrayQualityMetrics (492)
	arrayqualitymetrics (0)
	ArrayTools (35)
	ArrayTV (27)
	ARRmData (1)
	ARRmNormalization (92)
	arrow (23)
	arsenal (1)
	artMS (100)
	arules (1)
	ArvadosR (1)
	ASAFE (73)
	ASCAT (0)
	ascii (1)
	asciicast (1)
	ASEB (86)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ASGSCA (86)
	ash (6)
	ashr (1)
	asht (1)
	ASICS (112)
	AsioHeaders (5)
	askpass (164)
	ASMap (1)
	asmn (6)
	asnipe (0)
	ASpediaFI (14)
	ASpli (124)
	asremlPlus (0)
	assert (0)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (9)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (9)
	assertr (2)
	assertthat (2)
	AssessORF (168)
	ASSET (134)
	ASSIGN (144)
	assorthead (350)
	AssotesteR (0)
	astsa (1)
	ASURAT (80)
	async (0)
	ATACCoGAPS (60)
	ATACseqQC (394)
	ATACseqTFEA (80)
	ATE (1)
	atena (128)
	AtlasRDF (13)
	ATR (0)
	atSNP (101)
	attachment (4)
	attempt (1)
	attract (112)
	AUC (1)
	AUCell (2447)
	audio (1)
	audited (1)
	auth0 (1)
	autonomics (70)
	Autotuner (10)
	av (1)
	ava2 (1)
	AWFisher (80)
	aws (2)
	aws.ec2metadata (0)
	aws.s3 (6)
	aws.signature (6)
	awsMethods (1)
	awst (68)
	azcore (1)
	Azimuth (0)
	AzureAuth (1)
	AzureGraph (6)
	AzureRMR (6)
	AzureStor (0)

B

	b64 (1)
	BaalChIP (87)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (0)
	BAC (29)
	backports (106)
	bacon (138)
	bacr (0)
	BADER (93)
	badger (0)
	badminton (1)
	BadRegionFinder (79)
	BAGS (97)
	baguette (0)
	bain (1)
	BalancedSampling (0)
	ballgown (671)
	bambu (297)
	bamsignals (1081)
	BANDITS (134)
	bandle (73)
	Banksy (99)
	banocc (99)
	barcodetrackR (72)
	BART (0)
	bartMachine (0)
	bartMachineJARs (0)
	base (1)
	base2grob (1)
	base64 (3)
	base64enc (2)
	base64url (1)
	basecallQC (90)
	basefun (0)
	basemaps (1)
	BaseSpaceR (93)
	Basic4Cseq (96)
	BASiCS (184)
	BASiCStan (101)
	BasicSTARRseq (78)
	basilisk (3930)
	basilisk.utils (3647)
	batchelor (4006)
	BatchJobs (1)
	BatchQC (128)
	batchtools (1)
	battenberg (1)
	BayesFactor (2)
	BayesFM (0)
	BayesianTools (0)
	BayesKnockdown (74)
	bayesm (7)
	bayesmeta (0)
	BayesPeak (30)
	bayespeak (0)
	BayesPen (0)
	bayesplot (12)
	BayesPostEst (1)
	bayesQR (0)
	BayesSpace (261)
	bayestestR (9)
	BayesX (0)
	bayNorm (104)
	baySeq (489)
	bayseq (1)
	BB (1)
	BBCAnalyzer (84)
	BBmisc (1)
	bbmle (14)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	BCEE (0)
	bcellViper (1)
	bcp (1)
	BCRANK (107)
	bcSeq (81)
	BDgraph (0)
	BDMMAcorrect (34)
	bdsmatrix (14)
	BE (1)
	beachmat (16150)
	beachmat.hdf5 (104)
	beadarray (779)
	beadarraySNP (63)
	BeadDataPackR (641)
	BeadExplorer (4)
	beanplot (1)
	BEARscc (77)
	BEAT (92)
	beaver (1)
	BEclear (95)
	bedr (0)
	beepr (1)
	beer (75)
	beeswarm (1)
	bench (0)
	benchdamic (96)
	benchmarkme (0)
	benchmarkmeData (0)
	benchr (0)
	BentoBox (0)
	berryFunctions (1)
	BERT (39)
	Bessel (0)
	bestglm (1)
	bestNormalize (2)
	betaHMM (37)
	betareg (1)
	betr (28)
	bettermc (1)
	bettr (35)
	BeviMed (0)
	bezier (0)
	BFpack (1)
	BG2 (65)
	bgafun (29)
	BgeeCall (65)
	BgeeDB (158)
	BGLR (1)
	BGmix (23)
	bgs.ggtheme (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	bgx (103)
	BH (221)
	BHC (89)
	BIApylon (1)
	BiasedUrn (13)
	BIAutils (1)
	bib2df (1)
	bibtex (1)
	BicARE (160)
	biclust (0)
	BIEN (1)

	bife (0)
	BiFET (81)
	biganalytics (0)
	bigassertr (0)
	bigD (0)
	bigdist (0)
	BiGGR (96)
	BIGL (1)
	biglasso (0)
	biglm (4)
	biglmm (0)
	bigmelon (88)
	bigmemory (3)
	bigmemory.sri (3)
	bigmemoryExtras (26)
	bigparallelr (0)
	bigPint (25)
	bigreadr (0)
	bigrquery (15)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (0)
	bigutils (0)
	bigutilsr (0)
	billboarder (11)
	bim (3)
	BiMax (0)
	binb (1)
	BindingSiteFinder (76)
	bindr (1)
	bindrcpp (1)
	binGroup (0)
	binman (2)
	binom (0)
	binr (0)
	bio3d (5)
	bioassayR (102)
	biobank (1)
	Biobase (48991)
	biobase (1)
	BioBase (1)
	biobroom (239)
	biobtreeR (65)
	bioc::GenomeInfoDbData (0)
	bioCancer (98)
	BioCartaImage (59)
	BiocBaseUtils (6644)
	BiocBook (69)
	BiocBookDemo (3)
	BiocCaseStudies (33)
	BiocCheck (1717)
	biocDatasets (8)
	BiocDockerManager (12)
	BiocFHIR (66)
	BiocFileCache (26565)
	BiocFileCaches (1)
	BiocGenerics (57630)
	BioCGenerics (0)
	biocGraph (278)
	BiocHail (48)
	BiocHubsShiny (97)
	BiocInstaller (316)
	biocinstaller (2)
	Biocinstaller (0)
	BiocInstallerf (0)
	BiocIO (20146)
	BiocManager (311)
	biocmanager (1)
	BiocNeighbors (11046)
	biocneighbors (1)
	BiocOncoTK (82)
	Bioconductor (1)
	bioconductor (0)
	bioconductor-geomxtools (0)
	BioCor (103)
	BiocParallel (41709)
	BiocPkgTools (155)
	biocroxytest (47)
	BiocSet (327)
	BiocSingular (12726)
	BiocSklearn (104)
	BiocStyle (5873)
	biocthis (268)
	BiocVersion (60584)
	biocversion (1)
	Biocversion (1)
	BiocVersionBiocVersion (1)
	biocViews (4380)
	BiocWorkflowTools (187)
	biodb (194)
	biodbChebi (103)
	biodbExpasy (64)
	biodbHmdb (78)
	biodbKegg (80)
	biodbLipidmaps (46)
	biodbMirbase (26)
	biodbNcbi (68)
	biodbNci (75)
	biodbUniprot (67)
	bioDist (282)
	BiodiversityR (1)
	BioGA (15)
	Biogenerics (1)
	BioGenerics (1)
	biom (0)
	biomanager (1)
	BioManager (1)
	biomaRt (23501)
	biomart (0)
	biomartr (1)
	BioMedR (4)
	biomformat (5614)
	BioMM (17)
	biomod2 (1)
	BioMVCClass (96)
	biomvRCNS (96)
	BioNAR (83)
	BioNERO (324)
	BioNet (296)
	BioNetStat (86)
	BioPlex (6)
	BioQC (141)
	BioSeqClass (32)
	biosigner (117)
	biostat3 (1)
	biostatR (0)
	biostatUtil (0)
	Biostring (1)
	Biostrings (48065)
	biostrings (1)
	biosvd (27)
	BioTIP (89)
	biotmle (83)
	biotools (1)
	BioVersion (1)
	biovizBase (5462)
	BiplotML (1)
	BiRewire (152)

	birta (27)
	birte (13)
	biscuiteer (91)
	biscuiteerData (1)
	BiSeq (170)
	bit (78)
	bit64 (37)
	bitops (68)
	BitSeq (40)
	bizdays (2)
	bkbutils (1)
	blacksheepr (86)
	bladderbatch (1)
	BlakerCI (0)
	blastula (1)
	blavaan (1)
	blima (86)
	BLMA (95)
	blme (6)
	blob (65)
	blockcluster (1)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blogdown (0)
	BloodCancerMultiOmics2017 (1)
	BloodGen3Module (169)
	bluster (5616)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (1)
	BMisc (0)
	BMix (1)
	bmp (0)
	bmspal (1)
	bnbc (231)
	bnem (80)
	bnlearn (2)
	BOBaFIT (77)
	BOIN (0)
	bold (1)
	bookdown (35)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (77)
	bootstrap (0)
	borealis (73)
	Boruta (0)
	botor (0)
	box (10)
	box.linters (1)
	BPCells (1)
	bpcp (1)
	BPRMeth (124)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (0)
	BRAIN (145)
	brainflowprobes (50)
	brainImageR (4)
	BrainSABER (12)
	BrainStars (26)
	branchpointer (104)
	brave (0)
	breakpointR (83)
	breakpointRdata (1)
	brendaDb (73)
	brew (53)
	BREW3R.r (35)
	BRGenomics (122)
	brglm (0)
	brglm2 (1)
	bricks (0)
	brickster (0)
	bridge (33)
	BridgeDbR (94)
	bridgedist (0)
	bridgesampling (0)
	brio (163)
	brms (1)
	brmsmargins (0)
	broadSeq (18)
	Brobdingnag (1)
	broman (1)
	broom (112)
	broom.helpers (13)
	broom.mixed (1)
	broomExtra (1)
	BrowserViz (188)
	BrowserVizDemo (6)
	bs4Dash (9)
	BSgenome (16746)
	bsgenome (0)
	BSGenome (0)
	BSgenome.Celegans.UCSC.ce2 (1)
	BSgenome.Cfamiliaris.UCSC.canFam3 (5)
	BSgenome.Dmelanogaster.UCSC.dm3 (1)
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	SUITOR (58)
	SummarizedBenchmark (48)
	SummarizedExperiment (39460)
	summarizedExperiment (1)
	summarytools (1)
	Summix (65)
	sunburstR (0)
	superheat (0)
	SuperLearner (1)
	superpc (0)
	supersigs (152)
	SuppDists (2)
	supraHex (513)
	surfaltr (66)
	SurfR (34)
	survClust (17)
	survcomp (1278)
	surveillance (1)
	survex (1)
	survey (5)
	survival (234)
	survivalROC (1)
	survminer (4)
	survMisc (2)
	survMS (1)
	survPen (0)
	survPresmooth (0)
	survtmle (1)
	survtype (73)
	Sushi (68)
	susieR (19)
	sva (7526)
	svaNUMT (76)
	SVAPLSseq (12)
	svaRetro (78)
	svd (2)
	svDialogs (1)
	svglite (29)
	svGUI (0)
	SVM2CRM (13)
	SVMDO (126)
	svMisc (1)
	svUnit (1)
	swagger (1)
	swamp (1)
	SWATH2stats (82)
	SwathXtend (87)
	swfdr (89)
	Swiffer (1)
	SwimR (17)
	swirl (0)
	switchBox (140)
	switchde (79)
	sybil (1)
	sybilGUROBI (1)
	sybilSBML (1)
	sylly (0)
	sylly.en (0)
	symengine (1)
	symphony (1)
	synapser (1)
	synapsis (59)
	synapter (160)
	synbreed (1)
	synergyfinder (218)
	SynExtend (74)
	synlet (75)
	SynMut (68)
	syntenet (142)
	Synth (1)
	sys (96)
	sysfonts (2)
	systemfit (0)
	systemfonts (304)
	systemPipeR (1211)
	systempiper (1)
	systemPipeRdata (0)
	systemPipeShiny (82)
	systemPipeTools (77)
	syuzhet (0)

T

	table1 (3)
	tableHTML (1)
	tableone (1)
	tables (2)
	tabulapdf (1)
	tabulizer (1)
	tabulizerjars (1)
	tadar (69)
	TADCompare (101)
	TailRank (5)
	tanggle (83)
	TAPseq (81)
	tarchetypes (6)
	target (76)
	TargetDecoy (78)
	targets (9)
	TargetScore (95)
	TargetSearch (98)
	targetsearch (0)
	TarSeqQC (22)
	taskscheduleR (1)
	TauStar (1)
	taxadb (1)
	taxize (1)
	taxonomizr (1)
	TBSignatureProfiler (88)
	TCC (239)
	TCCGUI (1)
	TCGAbiolinks (4111)
	TCGAbiolinksGUI (34)
	TCGAbiolinksGUI.data (1)
	TCGAplot (1)
	TCGAutils (863)
	tcltk (1)
	tcltk2 (1)
	tclust (1)
	TCseq (226)
	TDARACNE (30)
	TDbasedUFE (90)
	TDbasedUFEadv (72)
	TeachingDemos (2)
	teal (1)
	teal.builder (1)
	teal.builder.modules (1)
	teal.code (2)
	teal.data (3)
	teal.goshawk (1)
	teal.logger (1)
	teal.modules.clinical (1)
	teal.modules.general (1)
	teal.modules.sanofi (1)
	teal.osprey (1)
	teal.reporter (1)
	teal.slice (2)
	teal.transform (1)
	teal.widgets (1)
	TEKRABber (206)
	templater (1)
	tensor (1)
	tensorA (12)
	tensorflow (18)
	TENxIO (71)
	TENxPBMCData (1)
	tenXplore (69)
	TEQC (107)
	tergm (0)
	tern (3)
	tern.gee (3)
	tern.mmrm (1)
	tern.rbmi (1)
	ternarynet (81)
	terra (36)
	terraTCGAdata (81)
	tesseract (1)
	tester (1)
	testit (0)
	testthat (302)
	texreg (2)
	text2vec (1)
	textfeatures (1)
	textrecipes (1)
	textshape (1)
	textshaping (185)
	TFARM (73)
	tfautograph (1)
	TFBSTools (3594)
	tfbstools (0)
	tfdatasets (0)
	TFEA.ChIP (98)
	TFHAZ (76)
	TFisher (1)
	TFMPvalue (8)
	tfrmt (1)
	tfruns (14)
	tfse (1)
	TFutils (105)
	tgp (1)
	tgxWebservices (0)
	TH.data (111)
	thematic (6)
	themeSanofi (1)
	themis (0)
	this.path (1)
	threejs (1)
	ThresholdROC (1)
	tibbke (1)
	tibble (43)
	tictoc (10)
	tidybayes (1)
	tidybulk (325)
	tidycensus (15)
	tidyclust (1)
	tidycmprsk (1)
	tidyCoverage (37)
	tidydr (1)

	tidyFlowCore (17)
	tidyfst (1)
	tidygraph (38)
	tidyHeatmap (1)
	tidyjson (0)
	tidylog (1)
	tidymodels (15)
	tidyomics (52)
	tidyposterior (1)
	tidypredict (1)
	tidyproject (1)
	tidyproteomics (1)
	tidyquant (1)
	tidyr (241)
	tidyrules (0)
	tidysbml (8)
	tidyselect (223)
	tidySEM (1)
	tidyseurat (1)
	tidySingleCellExperiment (238)
	tidySpatialExperiment (47)
	tidySummarizedExperiment (411)
	tidytable (1)
	tidyterra (2)
	tidytext (5)
	tidytlg (1)
	tidytof (15)
	tidytree (42)
	tidyTree (0)
	tidyverse (20)
	tidyvpc (1)
	tidyxl (1)
	tiff (4)
	tigre (107)
	tigris (16)
	tikzDevice (1)
	tiledb (1)
	TileDBArray (75)
	tiledbsoma (1)
	tilingArray (178)
	timechange (178)
	timecourse (110)
	timeDate (42)
	timeOmics (102)
	TimeProjection (1)
	timereg (1)
	TimerQuant (0)
	timescape (92)
	timeSeries (10)
	TimeSeriesExperiment (16)
	timetk (2)
	timevis (1)
	TimiRGeN (48)
	Timma (0)
	TIN (78)
	TINC (0)
	tinkr (0)
	tinysnapshot (0)
	tinytable (1)
	tinytest (0)
	tinytex (394)
	tippy (0)
	TiPS (1)
	tis (0)
	TissueEnrich (272)
	TitanCNA (111)
	titanic (0)
	tkrgl (0)
	tkrplot (0)
	tkWidgets (1354)
	tkwidgets (1)
	tldrm (1)
	TLMoments (1)
	tLOH (67)
	tm (4)
	tmap (1)
	tmaptools (1)
	TMB (40)
	tmcn (1)
	TMixClust (98)
	tmle (2)
	TMSig (2)
	tmvnsim (1)
	tmvtnorm (1)
	TNBC.CMS (48)
	TNO (1)
	TNRS (1)
	TnT (50)
	TOAST (429)
	toastui (6)
	tofsims (17)
	tokenizers (4)
	tokupika (0)
	tolerance (0)
	tomoda (73)
	tomoseqr (62)
	tools (1)
	toOrdinal (1)
	TOP (62)
	ToPASeq (19)
	topconfects (195)
	topdownr (100)
	topGO (3051)
	topgo (0)
	topicmodels (1)
	topr (4)
	torch (1)
	tornado (1)
	tourr (0)
	ToxicoGx (87)
	Tplyr (2)
	TPP (127)
	TPP2D (74)
	tpSVG (36)
	tracee (1)

	tracktables (163)
	trackViewer (584)
	trackviewer (1)
	tradeSeq (534)
	tradeseq (1)
	traits (1)
	TrajectoryGeometry (57)
	TrajectoryUtils (2000)
	tram (0)
	TraMineR (0)
	transcriptogramer (86)
	transcriptR (97)
	transformGamPoi (93)
	transformr (0)
	transite (81)
	translations (1)
	tRanslatome (235)
	transmogR (36)
	transomics2cytoscape (83)
	transport (1)
	TransView (86)
	TraRe (9)
	traseR (83)
	Travel (5)
	traviz (75)
	tree (0)
	TreeAndLeaf (148)
	treeclimbR (37)
	treeio (20539)
	treekoR (79)
	treemap (1)
	treemapify (1)
	treesitter.r (1)
	treespace (1)
	TreeSummarizedExperiment (1939)
	TREG (66)
	TReNA (3)
	trena (30)
	trendeval (1)
	Trendy (79)
	TRESS (111)
	triangle (1)
	tricycle (263)
	triebeard (3)
	triform (30)
	trigger (100)
	trimcluster (0)
	trio (131)
	tripack (0)
	triplex (94)
	tripr (66)
	tRNA (162)
	tRNAdbImport (139)
	tRNAscanImport (91)
	TRONCO (97)
	trtf (0)
	truncdist (0)
	truncnorm (4)
	truncreg (0)
	trust (0)
	tryCatchLog (1)
	TSAR (52)
	tsbox (1)
	TSCAN (706)
	tscR (15)
	tseries (10)
	tseriesChaos (0)
	tsfeatures (2)
	tsibble (1)
	tsibbledata (1)
	tsModel (0)
	tsna (0)
	tsne (1)
	tsoutliers (2)
	TSP (16)
	tspair (33)
	TSRchitect (18)
	TSSi (25)
	tsvio (1)
	ttdo (0)
	ttgsea (103)
	TTMap (79)
	TTR (7)
	ttservice (1)
	tufte (0)
	tune (15)
	tuneR (0)
	tuneRanger (1)
	TurboNorm (96)
	Turnover.cells.pSILAC.TMT (1)
	TVTB (90)
	twang (2)
	twangContinuous (0)
	tweeDEseq (176)
	tweedie (0)
	tweenr (33)
	twilight (141)
	twoddpcr (79)
	TwoSampleMR (0)
	twosamples (1)
	txcutr (66)
	TxDb.Hsapiens.UCSC.hg19.knownGene (6)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1)
	TxDb.Mmusculus.UCSC.mm10.ensGene (0)
	TxDb.Mmusculus.UCSC.mm10.knownGene (6)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	txdbmaker (1875)
	tximeta (1091)
	tximport (3458)
	tximportDat (0)
	tximportData (3)
	TxRegInfra (13)
	txtq (1)
	TypeInfo (80)
	tzdb (50)

U

V

	V.PhyloMaker2 (1)
	V8 (56)
	VAExprs (65)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (299)
	vaplot (0)
	vapour (0)
	VarCon (65)
	variables (0)
	variancePartition (972)
	VariantAnnotation (12286)
	variantannotation (1)
	VariantExperiment (65)
	VariantFiltering (113)
	VariantTools (187)
	VariantWarehouseBMS (1)
	varImp (0)
	vars (1)
	vasp (6)
	VaSP (78)
	vaultr (1)
	vbmp (120)
	VBsparsePCA (0)
	vcd (4)
	VCFArray (80)
	vcfR (1)

	vcr (0)
	vctrs (262)
	vdbR (0)
	vdiffr (2)
	VDJdive (69)
	Vega (22)
	VegaMC (86)
	vegan (23)
	vegawidget (1)
	velociraptor (157)
	velocyto.R (1)
	veloviz (63)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (9)
	VennDetail (272)
	VennDiagram (1)
	venneuler (1)
	VERSO (66)
	vetiver (1)
	VGAM (17)
	VGAMextra (1)
	vhydeg (0)
	VIBER (0)
	vidger (136)
	VIM (1)
	vimp (1)
	VineCopula (0)

	vioplot (1)
	vip (1)
	viper (758)
	vipor (16)
	viridis (200)
	viridisLite (69)
	viridislite (0)
	virtualArray (11)
	visdat (1)
	ViSEAGO (146)
	VisiumIO (39)
	visNetwork (3)
	visOmopResults (1)
	visR (1)
	vissE (117)
	vistime (31)
	vitae (1)
	Voyager (169)
	vpc (0)
	VplotR (77)
	vroom (145)
	vscDebugger (1)
	vsclust (70)
	vsn (5193)
	vtpnet (108)
	vulcan (88)

W

	WA43966.shareR.3043877 (1)
	waddR (67)
	waffle (1)
	waiter (11)
	wakefield (0)
	waldo (188)
	wallace (1)
	warp (17)
	wateRmelon (859)
	wavClusteR (85)
	waved (1)
	waveslim (1)
	waveTiling (29)
	wdm (0)
	wdman (2)
	weaver (94)
	webbioc (101)
	webchem (1)
	webdriver (0)
	webfakes (1)
	WebGestaltR (1)
	webmockr (0)
	webp (1)
	webshot (27)

	webshot2 (3)
	websocket (12)
	webutils (2)
	WeightIt (2)
	weights (3)
	WeightSVM (0)
	weitrix (76)
	WES.1KG.WUGSC (1)
	wesanderson (1)
	WGCNA (13)
	WGScan (0)
	WGSmapp (1)
	whereami (0)
	whisker (30)
	whitening (0)
	whoami (1)
	widgetframe (1)
	widgetInvoke (5)
	widgetTools (1352)
	widgettools (1)
	wiggleplotr (194)
	WikidataQueryServiceR (0)
	WikidataR (1)
	WikipediR (4)

	wikitaxa (0)
	wildmeta (0)
	winboxr (1)
	withr (318)
	wk (46)
	wmtsa (1)
	worcs (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (13)
	workflowsets (14)
	WorldFlora (1)
	worrms (2)
	wpm (76)
	wppi (49)
	wrapr (1)
	Wrench (1703)
	writexl (28)
	WriteXLS (4)
	wrMisc (1)
	WRS2 (2)

X

Y

	y2hStat (2)
	yaImpute (1)
	yaml (260)
	yamss (87)

	YAPSA (108)
	yaqcaffy (32)
	yardstick (21)
	yarn (147)

	ylab.utils (1)
	ymlthis (0)
	yspec (1)
	yulab.utils (67)

Z

	zCompositions (10)
	zeallot (0)
	zellkonverter (1356)
	zelusutils (1)
	zen4R (1)
	zenith (147)

	zFPKM (133)
	zinbwave (1017)
	zingeR (1)
	zip (187)
	Ziploc (1)
	zitools (12)

	zli (1)
	zlibbioc (54052)
	zoo (32)
	ZygosityPredictor (62)

Stats generated by https://github.com/Bioconductor/download_stats/