Entry: KCData-class
Aliases: KCData-class [[<-,KCData-method [[,KCData-method length,KCData-method unlist,KCData-method
Keywords: classes
Description: Internal class "KCData"
URL: ../../../library/KCsmart/html/KCData-class.html

Entry: KCsmart-package
Aliases: KCsmart-package KCsmart
Keywords: package
Description: KCsmart
URL: ../../../library/KCsmart/html/KCsmart-package.html

Entry: KcghData-class
Aliases: KcghData-class initialize,KcghData-method sort,KcghData,missing-method
Keywords: classes
Description: Class "KcghData"
URL: ../../../library/KCsmart/html/KcghData-class.html

Entry: KcghDataMirror-class
Aliases: KcghDataMirror-class initialize,KcghDataMirror-method
Keywords: classes
Description: Class "KcghDataMirror"
URL: ../../../library/KCsmart/html/KcghDataMirror-class.html

Entry: KcghDataSplit-class
Aliases: KcghDataSplit-class initialize,KcghDataSplit-method
Keywords: classes
Description: Class "KcghDataSplit"
URL: ../../../library/KCsmart/html/KcghDataSplit-class.html

Entry: KcghDataSum-class
Aliases: KcghDataSum-class initialize,KcghDataSum-method sort,KcghDataSum,missing-method
Keywords: classes
Description: Class "KcghDataSum"
URL: ../../../library/KCsmart/html/KcghDataSum-class.html

Entry: calcSpm
Aliases: calcSpm
Keywords: manip
Description: KCsmart wrapper
URL: ../../../library/KCsmart/html/calcSpm.html

Entry: findSigLevelFdr
Aliases: findSigLevelFdr
Keywords: manip
Description: This function has not been properly implemented yet
URL: ../../../library/KCsmart/html/findSigLevelFdr.html

Entry: findSigLevelTrad
Aliases: findSigLevelTrad
Keywords: manip
Description: Find significance level
URL: ../../../library/KCsmart/html/findSigLevelTrad.html

Entry: getSigSegments
Aliases: getSigSegments
Keywords: manip
Description: Retrieve the significantly gained and lost regions including the corresponding, original probes
URL: ../../../library/KCsmart/html/getSigSegments.html

Entry: hsMirrorLocs
Aliases: hsMirrorLocs
Keywords: datasets
Description: Mirror locations of the human genome
URL: ../../../library/KCsmart/html/hsMirrorLocs.html

Entry: hsSampleData
Aliases: hsSampleData
Keywords: datasets
Description: Homo Sapiens artificial cgh data set
URL: ../../../library/KCsmart/html/hsSampleData.html

Entry: idPoints
Aliases: idPoints
Keywords: iplot
Description: Identify points in sample point matrix plot
URL: ../../../library/KCsmart/html/idPoints.html

Entry: mmMirrorLocs
Aliases: mmMirrorLocs
Keywords: datasets
Description: Mirror locations of the mouse genome
URL: ../../../library/KCsmart/html/mmMirrorLocs.html

Entry: plot
Aliases: plot plot,scaleSpace,missing-method plot,samplePointMatrix,missing-method
Keywords: hplot
Description: Plot a sample point matrix
URL: ../../../library/KCsmart/html/plot.html

Entry: plotScaleSpace
Aliases: plotScaleSpace
Keywords: hplot
Description: Plot multiple significant regions in one figure
URL: ../../../library/KCsmart/html/plotScaleSpace.html

Entry: probeAnnotation-class
Aliases: probeAnnotation-class [,probeAnnotation-method initialize,probeAnnotation-method
Keywords: classes
Description: Class "probeAnnotation"
URL: ../../../library/KCsmart/html/probeAnnotation-class.html

Entry: samplePointMatrix-class
Aliases: samplePointMatrix-class show,samplePointMatrix-method
Keywords: classes
Description: Sample point matrix
URL: ../../../library/KCsmart/html/samplePointMatrix-class.html

Entry: sigSegments-class
Aliases: sigSegments-class show,sigSegments-method
Keywords: classes
Description: Significant segments
URL: ../../../library/KCsmart/html/sigSegments-class.html

Entry: write.table
Aliases: write.table write.table,sigSegments-method
Keywords: IO file
Description: Write summary of the significant regions to a table
URL: ../../../library/KCsmart/html/write.table.html
