Package: Biostrings
Title: String objects representing biological sequences, and matching
        algorithms
Description: Memory efficient string containers, string matching
        algorithms, and other utilities, for fast manipulation of large
        biological sequences or set of sequences.
Version: 2.10.22
Author: H. Pages, P. Aboyoun, R. Gentleman, and S. DebRoy
Maintainer: H. Pages <hpages@fhcrc.org>
biocViews: SequenceMatching, Genetics, Infrastructure
Depends: R (>= 2.8.0), methods, utils, IRanges (>= 1.0.14)
Imports: methods, utils, IRanges
LinkingTo: IRanges
Suggests: BSgenome, BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11), drosophila2probe,
        hgu95av2probe, RUnit
License: Artistic-2.0
LazyLoad: yes
Collate: 00datacache.R utils.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R
        GENETIC_CODE.R XStringCodec-class.R XString-class.R
        XStringSet-class.R XStringViews-class.R
        XStringViews-constructors.R MaskedXString-class.R readFASTA.R
        XStringSet-io.R letter.R subXString.R alphabetFrequency.R
        chartr.R reverse.R translate.R toComplex.R replaceLetterAt.R
        injectHardMask.R SparseList-class.R Dups-class.R MIndex-class.R
        match-utils.R matchPattern.R maskMotif.R matchPattern.BOC.R
        matchPattern.BOC2.R matchLRPatterns.R matchProbePair.R
        matchPWM.R findPalindromes.R PDict-class.R matchPDict.R
        XStringPartialMatches-class.R XStringQuality-class.R
        QualityScaledXStringSet.R InDel-class.R
        AlignedXStringSet-class.R PairwiseAlignedFixedSubject-class.R
        align-utils.R pmatchPattern.R pairwiseAlignment.R stringDist.R
        needwunsQS.R debug.R test.R zzz.R
Packaged: Thu Apr 2 14:43:20 2009; biocbuild
Built: R 2.8.1; i386-pc-mingw32; 2009-04-02 18:53:32; windows
