oGtypeExSet-class           package:GGBase           R Documentation

_C_l_a_s_s "_o_G_t_y_p_e_E_x_S_e_t" _o_l_i_g_o-_b_a_s_e_d _g_e_n_o_t_y_p_i_n_g _o_u_t_p_u_t + _e_x_p_r_e_s_s_i_o_n
_s_e_t _c_o_n_t_a_i_n_e_r - _o_b_s_o_l_e_t_e

_D_e_s_c_r_i_p_t_i_o_n:

     Class "oGtypeExSet" oligo-based genotyping output + expression set
     container - obsolete

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("oGtypeExSet",
     assayData, phenoData, featureData, experimentData, annotation,
     exprs, ...)'.

_S_l_o_t_s:


     '_s_n_p_C_a_l_l_s': Object of class '"list"' ~~ 

     '_d_b_C_o_n_n_s': Object of class '"list"' ~~ 

     '_a_s_s_a_y_D_a_t_a': Object of class '"AssayData"' ~~ 

     '_p_h_e_n_o_D_a_t_a': Object of class '"AnnotatedDataFrame"' ~~ 

     '_f_e_a_t_u_r_e_D_a_t_a': Object of class '"AnnotatedDataFrame"' ~~ 

     '_e_x_p_e_r_i_m_e_n_t_D_a_t_a': Object of class '"MIAME"' ~~ 

     '_a_n_n_o_t_a_t_i_o_n': Object of class '"character"' ~~ 

     '.___c_l_a_s_s_V_e_r_s_i_o_n__': Object of class '"Versions"' ~~ 

_E_x_t_e_n_d_s:

     Class '"ExpressionSet"', directly, with explicit coerce. Class
     '"eSet"', by class "ExpressionSet", distance 2, with explicit
     coerce. Class '"VersionedBiobase"', by class "ExpressionSet",
     distance 3, with explicit coerce. Class '"Versioned"', by class
     "ExpressionSet", distance 4, with explicit coerce.

_M_e_t_h_o_d_s:

     No methods defined with class "oGtypeExSet" in the signature.

_N_o_t_e:

     This class was designed to combine oligo SNP chip outputs with
     expression data.  This specific workflow is not supported at this
     time.  Convert the oligo outputs to snp.matrix and use smlSet
     container instead.

_E_x_a_m_p_l_e_s:

     showClass("oGtypeExSet")

