Entry: GGfitter-class
Aliases: GGfitter-class
Keywords: classes
Description: Class "GGfitter" legacy container for fast fitting of eQTL search models -- obsolete, see gwSnpScreen for more current approaches
URL: ../../../library/GGBase/html/GGfitter-class.html

Entry: genesym-class
Aliases: genesym-class chrnum-class chrnum,numeric-method exFeatID-class rsNum-class rsNum,character-method snpID-class snpLocNCref-class show,snpLocNCref-method cnumOrMissing-class genesym chrnum exFeatID rsNum snpID snpLocNCref cnumOrMissing
Keywords: classes
Description: Class "genesym" and other casting classes
URL: ../../../library/GGBase/html/casting.html

Entry: gwSnpScreenResult-class
Aliases: gwSnpScreenResult-class cwSnpScreenResult-class multiGwSnpScreenResult-class
Keywords: classes
Description: Class "gwSnpScreenResult" -- container for GGtools gwSnpScreen method outputs and allied objects
URL: ../../../library/GGBase/html/gwSnpScreenResult-class.html

Entry: hmceuAmbB36_23a_dbconn
Aliases: hmceuAmbB36_23a_dbconn hmceuAmbB36_23a_dbfile
Keywords: models
Description: SQLite infrastructure for SNP locations
URL: ../../../library/GGBase/html/hmceuAmbB36_dbconn.html

Entry: oGtypeExSet-class
Aliases: oGtypeExSet-class
Keywords: classes
Description: Class "oGtypeExSet" oligo-based genotyping output + expression set container -- obsolete
URL: ../../../library/GGBase/html/oGtypeExSet-class.html

Entry: racExSet-class
Aliases: racExSet-class initialize,racExSet-method
Keywords: classes
Description: Class "racExSet" -- container for genotype data in 'rare allele count' form and expression data. Approaching obsolescence, see smlSet for more efficient representation.
URL: ../../../library/GGBase/html/racExSet-class.html

Entry: smlSet-class
Aliases: smlSet-class smList,smlSet-method smlEnv,smlSet-method smList smlEnv
Keywords: classes
Description: Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes
URL: ../../../library/GGBase/html/smlSet-class.html

Entry: snpMeta-class
Aliases: snpMeta-class snpMetaWhole-class
Keywords: classes
Description: Class "snpMeta" representing SNP locations etc., obsolete for humans, still used for murine data.
URL: ../../../library/GGBase/html/snpMeta-class.html

Entry: snpScreenResult-class
Aliases: snpScreenResult-class twSnpScreenResult-class
Keywords: classes
Description: Class "snpScreenResult" -- container approaching obsolescence, retained for legacy purposes, that holds expression vs genotype analysis results; see gwSnpScreenResult for more current approach.
URL: ../../../library/GGBase/html/snpScreenResult-class.html
