aCGH                    Class aCGH
aCGH.read.Sprocs        Create object of class "aCGH" from Sproc files
colorectal              Colorectal array CGH dataset
computeSD.func          Function to estimate experimental variability
                        of a sample
find.genomic.events     Finds the genomic events associated with each
                        of the array CGH samples
find.hmm.states         Determines states of the clones
findAber.func           Function to determines focal aberrations
findAmplif.func         Function to determine high level
                        amplifications
findOutliers.func       Function to identify outlier clones
findTrans.func          Funtion identifying the transitions
heatmap                 Default method for plotting array CGH objects
human.chrom.info.Jul03
                        Basic Chromosomal Information for UCSC Human
                        Genome Assembly July 2003 freeze
impute.lowess           Imputing log2 ratios
mergeFunc               Funtion to merge states based on their state
                        means
plotFreqStat            frequency plots and significance analysis
plotGenome              Plots the genome
plotHmmStates           Plotting the estimated hmm states and log2
                        ratios for each sample.
plotSummaryProfile      plotSummaryProfile
plotvalGenome.func      clustering and heatmap
states.hmm.func         A function to fit unsupervised Hidden Markov
                        model
