maDotPlots            package:marrayPlots            R Documentation

_P_r_o_d_u_c_e _a _d_o_t _p_l_o_t _f_o_r _r_e_p_l_i_c_a_t_e_d _c_o_n_t_r_o_l_s _g_e_n_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     A dot plot showing the values of replicated control genes

_U_s_a_g_e:

     maDotPlots(data, x = list("maA"), id = "ID", pch, col, nrep = 3, ...)

_A_r_g_u_m_e_n_t_s:

    data: Microarray object of class `"marrayRaw"'. By default, plots
          are done for the first array in the batch.

       x: Name of accessor method for the spot statistic to be display.
          E.g. maM to display log-ratios and maA to display
          log-intensities

      id: Integer value specifying the index of the array.

     pch: point style for different control samples.

     col: color code for different control samples.

    nrep: Integer value indicating the minimum number of replicated
          spots required.

     ...: Optional graphical parameters, see `par'.

_V_a_l_u_e:

     Produce a dot plot showing the values of replicated control genes.

_A_u_t_h_o_r(_s):

     Yee Hwa (Jean) Yang

_E_x_a_m_p_l_e_s:

       data(swirl)
       maControls(swirl) <- maGenControls(maGnames(swirl), id="Name")
       maDotPlots(swirl[,1])

