\Header{pamr.internal}{Internal functions used by pamr}
\alias{balanced.folds}{pamr.internal}
\alias{descendants}{pamr.internal}
\alias{diag.disc}{pamr.internal}
\alias{enlist}{pamr.internal}
\alias{error.bars}{pamr.internal}
\alias{error.nsc}{pamr.internal}
\alias{misreg.simple}{pamr.internal}
\alias{nnmiss}{pamr.internal}
\alias{nsc}{pamr.internal}
\alias{nsccv}{pamr.internal}
\alias{pamr.cube.root}{pamr.internal}
\alias{pamr.pairscore}{pamr.internal}
\alias{pamr.predictmany}{pamr.internal}
\alias{pamr.xl.compute.confusion}{pamr.internal}
\alias{pamr.xl.compute.cv.confusion}{pamr.internal}
\alias{pamr.xl.compute.offset}{pamr.internal}
\alias{pamr.xl.derive.adjusted.prior}{pamr.internal}
\alias{pamr.xl.get.default.training.parameters}{pamr.internal}
\alias{pamr.xl.get.offset}{pamr.internal}
\alias{pamr.xl.get.sample.prior}{pamr.internal}
\alias{pamr.xl.get.uniform.prior}{pamr.internal}
\alias{pamr.xl.is.a.subset}{pamr.internal}
\alias{pamr.xl.listgenes.compute}{pamr.internal}
\alias{pamr.xl.plot.test.probs.compute}{pamr.internal}
\alias{pamr.xl.plot.training.error.compute}{pamr.internal}
\alias{pamr.xl.plotcen.compute}{pamr.internal}
\alias{pamr.xl.plotcv.compute}{pamr.internal}
\alias{pamr.xl.plotcvprob.compute}{pamr.internal}
\alias{pamr.xl.predict.test.class}{pamr.internal}
\methalias{pamr.xl.predict.test.class.only}{pamr.internal}
\alias{pamr.xl.predict.test.probs}{pamr.internal}
\alias{pamr.xl.process.data}{pamr.internal}
\alias{pamr.xl.test.data.impute}{pamr.internal}
\alias{pamr.xl.test.errors.compute}{pamr.internal}
\alias{pamr.xl.transform.class.labels}{pamr.internal}
\alias{pamr.xl.transform.data}{pamr.internal}
\alias{pamr.xl.transform.test.data}{pamr.internal}
\alias{permute.rows}{pamr.internal}
\alias{print.nsc}{pamr.internal}
\alias{print.nsccv}{pamr.internal}
\alias{roc.nsc}{pamr.internal}
\alias{soft.shrink}{pamr.internal}
\alias{softmax}{pamr.internal}
\methalias{softmax}{pamr.internal}
\begin{Description}\relax
Internal functions used by pamr
\end{Description}
\begin{Usage}
\begin{verbatim}\end{verbatim}
\end{Usage}
\begin{Arguments}
\end{Arguments}
\begin{Details}\relax
These
functions are internal to the package and not meant to be called by
users.
\end{Details}
\begin{Value}
\end{Value}
\begin{Author}\relax
Trevor Hastie, Robert Tibshirani, Balasubramanian Narasimhan, and Gilbert Chu
\end{Author}
\begin{References}\relax
\end{References}

