ecoli.m52.genome           package:ecolitk           R Documentation

_E_s_c_h_e_r_i_c_h_i_a _c_o_l_i _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Meta-data related to Escherichia coli

_U_s_a_g_e:

     data(ecoli.m52.genome)
     data(ecoligenomeCHRLOC)
     data(ecoligenomeSYMBOL2AFFFY)
     data(ecoligenomeSYMBOL)
     data(ecoligenomeSTRAND)
     ecoli.len

_F_o_r_m_a_t:

     The format for 'ecoli.m52.genome' is 'character' with genome
     sequence. The format for 'ecoligenomeCHRLOC' is an environment (as
     a hash table). Each key is an Affyemtrix probe set ID, and each
     value is vector of two integers (begining and end - see the
     details below) The format for 'ecoligenomeSYMBOL2AFFFY' is an
     environment (as a hash table). Each key is a gene symbol name. The
     format for 'ecoligenomeSYMBOL' is an environment (as a hash
     table). Each key is an Affymetrix probe set id 'ecoli.len' is a
     variable containing the size of the genome in 'ecoli.m52.genome'.

_D_e_t_a_i_l_s:

     The environments 'ecoligenomeSYMBOL2AFFFY' and 'ecoligenomeSYMBOL'
     are like the ones in the data packages built by 'annBuilder'.

     The environment 'ecoligenomeCHRLOC' differs: two integers are
     associated with each key, one corresponds to the begining of the
     segment the other to the end.

     The environment ecoligenomeSTRAND returns a 'logical'. 'TRUE'
     means that the orientation is `+', 'FALSE' means that the
     orientation is '-' (and 'NA' is used when irrelevant for the key).

_S_o_u_r_c_e:

     <URL: http://www.genome.wisc.edu/sequencing/k12.htm> and <URL:
     http://www.biostat.harvard.edu/complab/dchip/info_file.htm>

_E_x_a_m_p_l_e_s:

     data(ecoli.m52.genome)

