From a list of miRNA names, find their targets in targetscan.Hs.eg.db annotation package.

mirna2targetscan(mirna, species = "hsa", org = NULL, keytype = NULL)

Arguments

mirna

Character vector with miRNA names as in miRBase 21.

species

hsa or mmu supported right now.

org

AnnotationDb obejct. For example:(org.Mm.eg.db)

keytype

Character mentioning the gene id to use. For example, ENSEMBL.

Value

data.frame with 4 columns:

  • miRFamily

  • Seedmatch

  • PCT

  • entrezGene

Examples

library(targetscan.Hs.eg.db)
#> Error in library(targetscan.Hs.eg.db): there is no package called ‘targetscan.Hs.eg.db’
mirna2targetscan(c("hsa-miR-34c-5p"))
#> Error in keys(targetscan.Hs.egMIRNA): object 'targetscan.Hs.egMIRNA' not found