create3Dnetwork {transomics2cytoscape} | R Documentation |
Import multiple KEGG pathways and integrate the pathways into Cy3D renderer
create3Dnetwork(networkDataDir, networkLayers, stylexml)
networkDataDir |
Path of a directory to put the network files of the second column of networkLayers TSV. |
networkLayers |
Path of a TSV file with the 3 columns (layer index, the network file name in networkDataDir, Z-height of the network). |
stylexml |
Path of a XML file for Cytoscape style |
A SUID of the 3D network.
Kozo Nishida
## Not run: networkDataDir <- tempfile(); dir.create(networkDataDir) networkLayers <- system.file("extdata", "yugi2014.tsv", package = "transomics2cytoscape") stylexml <- system.file("extdata", "transomics.xml", package = "transomics2cytoscape") suid <- create3Dnetwork(networkDataDir, networkLayers, stylexml) ## End(Not run)