classicScore-class {topGO} | R Documentation |
A class that extends the virtual class "groupStats" by adding a slot representing the score of each gene. It is used for tests like Kolmogorov-Smirnov test.
Objects can be created by calls of the form new("classicScore", testStatistic, name, allMembers, groupMembers, score, decreasing)
.
score
:Object of class "numeric"
~~
name
:Object of class "character"
~~
allMembers
:Object of class "character"
~~
members
:Object of class "character"
~~
testStatistic
:Object of class "function"
~~
scoreOrder
:Object of class "character"
~~
testStatPar
:Object of class "ANY"
~~
Class "groupStats"
, directly.
Method to obtain the score of all members.
Returns TRUE if the score should be ordered increasing, FALSE otherwise.
signature(object = "classicScore")
: ...
signature(object = "classicScore")
: ...
signature(object = "classicScore")
: ...
Adrian Alexa
classicCount-class
,
groupStats-class
,
getSigGroups-methods
## define the type of test you want to use test.stat <- new("classicScore", testStatistic = GOKSTest, name = "KS tests")