sanitise_inputs {switchde} | R Documentation |
Sanitise inputs
sanitise_inputs(object, pseudotime, lower_threshold, zero_inflated, sce_assay)
object |
The object passed at the entry point (either a SCESet or gene expression matrix) |
pseudotime |
A pseudotime vector |
lower_threshold |
The minimum threshold below which to set expression to zero to avoid numerical issues. Default is 0.01 |
zero_inflated |
Logical. Should zero inflation be implemented? Default |
sce_assay |
The assay from the |
A list with two entries: a gene expression matrix X
and a pseudotime vector pst
.