exportSCEtoFlatFile {singleCellTK} | R Documentation |
Writes all assays, colData, rowData, reducedDims, and altExps objects in a SingleCellExperiment to text files. The items in the 'metadata' slot remain stored in list and are saved in an RDS file.
exportSCEtoFlatFile( sce, outputDir = "./", overwrite = TRUE, gzipped = TRUE, prefix = "SCE" )
sce |
SingleCellExperiment object to be exported. |
outputDir |
Name of the directory to store the exported file(s). |
overwrite |
Boolean. Whether to overwrite the output files. Default
|
gzipped |
Boolean. |
prefix |
Prefix of file names. |
Generates text files containing data from inSCE
.
data(sce_chcl, package = "scds") ## Not run: exportSCEtoFlatFile(sce_chcl, "sce_chcl") ## End(Not run)