test_comparison {seqCAT} | R Documentation |
Overlapping and compared variants from "sample1" and "sample2" originating from the example.vcf file included in the inst/extdata directory, for use in unit tests.
data(test_comparison)
A dataframe with 51 rows and 39 columns:
chromosome
SNV position
total variant depth, sample 1
allelic depth, allele 1, sample 1
allelic depth, allele 2, sample 1
allele 1, sample 1
allele 2, sample 1
warnings from variant calling, sample 1
total variant depth, sample 2
allelic depth, allele 1, sample 2
allelic depth, allele 2, sample 2
allele 1, sample 2
allele 2, sample 2
warnings from variant calling, sample 2
name, sample 1
name, sample 2
status of genotype comparison
mutation ID
associated gene
ensembl gene ID
ensembl transcript ID
reference allele
alternative allele
putative variant impact
variant effect
transcript feature
transcript biotype