getES {phantasus} | R Documentation |
getES
return the ExpressionSet object(s) corresponding
to GEO identifier.
getES( name, type = NA, destdir = tempdir(), mirrorPath = "https://ftp.ncbi.nlm.nih.gov" )
name |
String, containing GEO identifier of the dataset. It should start with 'GSE' or 'GDS' and can include exact GPL to annotate dataset, separated with dash ('-') from the identifier. |
type |
Type of the dataset: 'GSE' or 'GDS'. If not specified,
the function will take first three letters
of |
destdir |
Directory for caching loaded Series and GPL files from GEO database. |
mirrorPath |
URL string which specifies the source of matrices. |
List of ExpressionSet objects, that were available by given
in name
variable GEO identifier.
## Not run: getES('GSE14308', type = 'GSE', destdir = 'cache') getES('GSE27112') ## End(Not run) getES('GDS4922')