plotNhoodGraphDA {miloR} | R Documentation |
Visualize log-FC estimated with differential nhood abundance testing on embedding of original single-cell dataset.
Visualize grouping of neighbourhoods obtained with groupNhoods
plotNhoodGraphDA(x, milo_res, alpha = 0.05, res_column = "logFC", ...) plotNhoodGroups(x, milo_res, show_groups = NULL, ...)
x |
A |
milo_res |
a data.frame of milo results containing the |
alpha |
significance level for Spatial FDR (default: 0.05) |
res_column |
which column of |
... |
arguments to pass to |
show_groups |
a character vector indicating which groups to plot all other neighbourhoods will be gray |
a ggplot
object
a ggplot
object
Emma Dann
Emma Dann
NULL NULL