cpgcount {methylMnM} | R Documentation |
Call C programs to R for calculate which CpG are contained in MRE-CpG.
cpgcount(data2, data3, cpg2, cpg3, datalength, cpglength, count=rep(0,cpglength))
data2 |
Start position of each MRE-CpG. |
data3 |
End position of each MRE-CpG. |
cpg2 |
Start position of each CpG. |
cpg3 |
End position of each CpG. |
datalength |
The number of MRE-CpG. |
cpglength |
The number of MRE-CpG. |
count |
MRE-CpG count of each CpG. |
MRE-CpG count of each CpG.
Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang
cpg<-matrix( 1:800, nrow=400 ) cpg[,2]<-cpg[,1]+2 data<-cpg[3:100,] data[,1]<-data[,1]-1 data[,2]<-data[,2]+1 f <- cpgcount(data[,1], data[,2], cpg[,1], cpg[,2], length(data[,1]), length(cpg[,2]), count=rep(0,length(cpg[,2])))