countMappableReadsInInterval {groHMM} | R Documentation |
Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.
countMappableReadsInInterval(features, UnMap, debug = FALSE, ...)
features |
A GRanges object representing a set of genomic coordinates. The meta-plot will be centered on the start position. |
UnMap |
List object representing the position of un-mappable reads. Default: not used. |
debug |
If set to TRUE, provides additional print options. Default: FALSE |
... |
Extra argument passed to mclapply |
Returns a vector of counts, each representing the number of reads inside each genomic interval.
Charles G. Danko and Minho Chae