ct.GREATdb {gCrisprTools} | R Documentation |
Update a gene-centric msdb object for GREAT-style enrichment analysis using a specified CRISPR annotation.
ct.GREATdb( annotation, gsdb = getMSigGeneSetDb(c("h", "c2"), "human"), minsize = 10 )
annotation |
an annotation object returned by |
gsdb |
A gene-centric |
minsize |
Minimum number of targets required to consider a geneset valid for analysis. |
A new GeneSetDb
object with the features annotated genewise to pathways.