DPT matrix methods {destiny} | R Documentation |
Treat DPT object as a matrix of cell-by-cell DPT distances.
## S4 method for signature 'DPT,index,index,logicalOrMissing' x[i, j, ..., drop = TRUE] ## S4 method for signature 'DPT,index,missing,logicalOrMissing' x[i, j, ..., drop = TRUE] ## S4 method for signature 'DPT,missing,index,logicalOrMissing' x[i, j, ..., drop = TRUE] ## S4 method for signature 'DPT,missing,missing,logicalOrMissing' x[i, j, ..., drop = TRUE] ## S4 method for signature 'DPT,index,index' x[[i, j, ...]] ## S4 method for signature 'DPT' nrow(x) ## S4 method for signature 'DPT' ncol(x) ## S4 method for signature 'DPT' dim(x)
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data(guo_norm) dm <- DiffusionMap(guo_norm) dpt <- DPT(dm) set.seed(1) plot(dpt[random_root(dpt), ], Biobase::exprs(guo_norm)['DppaI', ])