fixMSD {cellmigRation} | R Documentation |
This function is a part of the MSD function, which computes the mean square displacements across several sequential time intervals.
fixMSD( Object, Step, SlopePlot, AllSlopesPlot, FurthPlot, AllFurthPlot, sLAG, ffLAG, color, export, ExpName, new.fld )
Step |
A numeric value of the number of trajectory steps. |
SlopePlot |
A logical vector that allows generating individual plots showing the slope of the mean square displacement of the movement of individual cells. Default is TRUE. |
AllSlopesPlot |
A logical vector that allows generating a plot showing the slope of the mean square displacement of the movement of all cells. Default is TRUE. |
FurthPlot |
A logical vector that allows generating individual plots fitting the Furth formula using generalized regression by the Nelder–Mead method simplex method per cell. Default is TRUE. |
AllFurthPlot |
A logical vector that allows generating a plot fitting the Furth formula using generalized regression by the Nelder–Mead method simplex method for all cells. Default is TRUE. |
sLAG |
A numeric value to be used to get the number of lags for the slope fitting. Default is 0.25, which represents 25 percent of the steps. |
ffLAG |
A numeric value to be used to get the number of lags for the Furth formula fitting. Default is 0.25, which represents 25 percent of the steps. |
color |
A vector of colors that will be used for the plots |
export |
if 'TRUE' (default), exports function output |
ExpName |
String, name of the experiment |
new.fld |
path to the folder where to save files |
object |
|
A data frame named "MSDResultsTable".
Salim Ghannoum salim.ghannoum@medisin.uio.no
https://www.data-pulse.com/dev_site/cellmigration/
cellmigRation:::fixMSD(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)