condenseSampleNames {biscuiteer} | R Documentation |
Utility function for extracting sample names from tabix'ed sample columns, assuming a VCF-naming scheme (such as Sample_1.foo, Sample_1.bar or Sample1_foo, Sample1_bar).
condenseSampleNames(tbx, stride, trailing = "\\.$")
tbx |
A TabixFile instance to parse |
stride |
How many columns per sample |
trailing |
Trailing character to trim (DEFAULT: "\.$") |
A character vector of sample names (longest common substrings)
library(Rsamtools) orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz", package="biscuiteer") if (length(headerTabix(orig_bed)$header) > 0) { condenseSampleNames(orig_bed, 2) }