Custom2GO {ViSEAGO} | R Documentation |
Store the available species and current GO annotations from a custom table file
Custom2GO(file)
file |
custom GO annotation file |
This function load a custom GO annotation database table that must contain columns:
custom taxonomic identifiants
custom gene identifiants
custom gene symbols
Known GO identifiants (see select(GO.db,columns=columns(GO.db),keys=keys(GO.db))
Known GO evidence codes
a genomic_ressource-class
object required by annotate
.
Matt Dowle and Arun Srinivasan (2017). data.table: Extension of 'data.frame'. R package version 1.10.4. https://CRAN.R-project.org/package=data.table.
Other genomic_ressource:
Bioconductor2GO()
,
Ensembl2GO()
,
EntrezGene2GO()
,
Uniprot2GO()
,
annotate()
,
available_organisms()
,
genomic_ressource-class
,
taxonomy()
# Download custom GO annotations Custom<-ViSEAGO::Custom2GO( system.file( "extdata/customfile.txt", package = "ViSEAGO" ) )