seqinfo {TnT} | R Documentation |
Seqinfo of TnTTrack and TnTBoard
## S4 replacement method for signature 'RangeBasedTrack' seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value ## S4 method for signature 'RangeBasedTrack' seqinfo(x) ## S4 method for signature 'RangeBasedTrack' seqlevelsInUse(x) ## S4 method for signature 'TnTBoard' seqinfo(x) ## S4 method for signature 'CompositeTrack' seqinfo(x) ## S4 replacement method for signature 'CompositeTrack' seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value ## S4 method for signature 'CompositeTrack' seqlevelsInUse(x)
x |
A TnTTrack or TnTBoard object. |
new2old, pruning.mode, value |
Passed to seqinfo method for GenomicRanges. |
seqinfo
returns a SeqInfo object.
btrack1 <- BlockTrack(GRanges("chr1", IRanges(1, 123))) btrack2 <- BlockTrack(GRanges("chr2", IRanges(3, 599))) ctrack <- merge(btrack1, btrack2) board <- TnTBoard(list(btrack1, btrack2)) seqinfo(btrack1) seqinfo(btrack2) seqinfo(ctrack) seqinfo(board)