quickMap {TimiRGeN} | R Documentation |
Generates a heatmap of all miRNA:mRNA binding pairs that have been filtered. Pairs are ranked by decreasing correlation.
quickMap(filt_df, numpairs)
filt_df |
Dataframe from the matrixFilter function. |
numpairs |
Number of pairs to plot. Must be an integer more than 1. |
Heatmap of miRNA-mRNA pairs.
Filt_df <- data.frame(row.names = c("mmu-miR-145a-3p:Adamts15", "mmu-miR-146a-5p:Acy1"), corr = c(-0.9191653, -0.7826041), miR = c("mmu-miR-145a-3p", "mmu-miR-146a-5p"), mRNA = c("Adamts15", "Acy1"), miR_Entrez = c(387163, NA), mRNA_Entrez = c(235130, 109652), TargetScan = c(1, 0), miRDB = c(0, 0), Predicted_Interactions = c(1, 0), miRTarBase = c(0, 1), Pred_Fun = c(1, 1)) MAE <- MultiAssayExperiment() MAE <- matrixFilter(MAE, miningMatrix = Filt_df, negativeOnly = FALSE, threshold = 1, predictedOnly = FALSE) quickMap(filt_df = MAE[[1]], numpairs = 2)