markerQualityControl {SubCellBarCode} | R Documentation |
Given the proteomics data, quality of the overlapped marker proteins are evaluated by correlating replicates of fractions.
markerQualityControl(coveredProteins, protein.data)
coveredProteins |
character; list of marker proteins, gene symbols, that are covered in 3365 marker proteins. |
protein.data |
data.frame; fractionated proteomics data, rownames are gene symbols associated protein. |
robustMarkers
{ df <- loadData(SubCellBarCode::hcc827Ctrl) c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1]) r.markers <- markerQualityControl(c.prots[1:5], df) }