mergeCls {SubCellBarCode} | R Documentation |
Compartment and neighborhood classifications are merged for the single output.
mergeCls(compartmentCls, neighborhoodCls)
compartmentCls |
data.frame; all predictions, including unclassified as well, and probablity vectors for each protein in compartment classification |
neighborhoodCls |
data.frame; all predictions, including unclassified as well, and probablity vectors for each protein in compartment classification |
cls.df
{ #create mock data com.df <- data.frame(Proteins = "TP53", svm.pred = "N1", S1 = as.numeric(0.02), S2 = as.numeric(0.02), S3 = as.numeric(0.02), S4 = as.numeric(0.02), N1 = as.numeric(0.72), N2 = as.numeric(0.02), N3 = as.numeric(0.02), N4 = as.numeric(0.02), C1 = as.numeric(0.02), C2 = as.numeric(0.02), C3 = as.numeric(0.02), C4 = as.numeric(0.02), C5 = as.numeric(0.02), M1 = as.numeric(0.02), M2 = as.numeric(0.02)) rownames(com.df) <- "TP53" neig.df <- data.frame(Proteins = "TP53", svm.pred.all = "Nuclear", Secretory = as.numeric(0.01), Nuclear = as.numeric(0.95), Cytosol = as.numeric(0.02), Mitochondria = as.numeric(0.02)) rownames(neig.df) <- "TP53" cls.df <- mergeCls(com.df, neig.df) }