makeSGFeatureCounts {SGSeq}R Documentation

Create SGFeatureCounts object

Description

Create SGFeatureCounts object from rowRanges, colData and counts.

Usage

makeSGFeatureCounts(rowRanges, colData, counts, min_anchor = 1)

Arguments

rowRanges

SGFeatures object

colData

Data frame with sample information

counts

Integer matrix of counts

min_anchor

Integer specifiying minimum anchor length

Value

SGFeatureCounts object

Author(s)

Leonard Goldstein

Examples

sgfc <- makeSGFeatureCounts(sgf_pred, si,
  matrix(0L, length(sgf_pred), nrow(si)))

[Package SGSeq version 1.26.0 Index]