initiateAnalysis {ROSeq}R Documentation

Computes differential analysis for a given gene

Description

Takes in the row index which corresponds to a gene and evaluates for differential expression across two cell types.

Usage

initiateAnalysis(gene, scdata, scgroups, classOne, classTwo)

Arguments

gene

The row index of the normalised and filtered, read count matrix

scdata

The normalised and filtered, read count matrix

scgroups

The location of the two sub-populations

classOne

The location of the first sub-population, for example, sample names as given as columns names

classTwo

The location of thesecond sub-population, for example, sample names as given as columns names

Value

combinedResults A vector containing 12 values (gr1: a, g1: b, gr1: A, gr1: number of bins, gr1: R2, gr2: a, gr2: b, gr2: A, gr2: number of bins, gr2: R2, T, p)


[Package ROSeq version 1.4.0 Index]