downloadPertSig {PharmacoGx} | R Documentation |
Download Drug Perturbation Signatures
Description
This function allows you to download an array of drug perturbation
signatures, as would be computed by the drugPerturbationSig
function,
for the available perturbation PharmacoSets
. This function allows the
user to skip these very lengthy calculation steps for the datasets available,
and start their analysis from the already computed signatures
Usage
downloadPertSig(
name,
saveDir = file.path(".", "PSets", "Sigs"),
fileName,
verbose = TRUE,
...,
myfn
)
Arguments
name |
A character(1) string, the name of the PharmacoSet for which
to download signatures. The name should match the names returned in the
PSet Name column of availablePSets(canonical=FALSE) .
|
saveDir |
A character(1) string with the folder path where the
PharmacoSet should be saved. Defaults to "./PSets/Sigs/" . Will
create directory if it does not exist.
|
fileName |
character(1) What to name the downloaded file. Defaults
to 'name _signature.RData' when excluded.
|
verbose |
logical(1) Should downloader show detailed messages?
|
... |
pairlist Force subsequent arguments to be named.
|
myfn |
character(1) A deprecated version of fileName . Still works
for now, but will be deprecated in future releases.
|
Value
An array type object contaning the signatures
Examples
## Not run:
if (interactive()) downloadPertSig("CMAP_2016")
## End(Not run)
[Package
PharmacoGx version 2.4.0
Index]