Est2Phase {POWSC}R Documentation

Estimate characterized parameters for a given scRNA-seq data (SingleCellExperiment object or a count matrix).

Description

These parameters include four gene-wise parameters and two cell-wise parameters.

Usage

Est2Phase(sce, low.prob = 0.99)

Arguments

sce

SingleCellExperiment object with assays(sce)[[1]] is the count matrix or input directly

low.prob

lower bound probability for phase I

Value

a list of needed estimated parameters

Examples

data("es_mef_sce")
sce = es_mef_sce[, colData(es_mef_sce)$cellTypes == "fibro"]
set.seed(123)
rix = sample(1:nrow(sce), 500)
sce = sce[rix, ]
estParas = Est2Phase(sce)

[Package POWSC version 1.0.0 Index]