plot_POWSC {POWSC} | R Documentation |
plot the result use visualization.
plot_POWSC(POWSCobj, Form = c("I", "II"), Cell_Type = c("PW", "Multi"))
POWSCobj |
a POWSC object from |
Form |
choose from "I" or "II". |
Cell_Type |
choose from "PW" or "Multi" |
for multiple comparison cases, return the pheatmap; for the pairwise comparison, return the ggplot object.
data("es_mef_sce") sce = es_mef_sce[, colData(es_mef_sce)$cellTypes == "fibro"] set.seed(12) rix = sample(1:nrow(sce), 500) sce = sce[rix, ] est_Paras = Est2Phase(sce) sim_size = c(100, 200) # A numeric vector pow_rslt = runPOWSC(sim_size = sim_size, est_Paras = est_Paras,per_DE=0.05, DE_Method = "MAST", Cell_Type = "PW") # Note, using our previous developed tool SC2P is faster. plot_POWSC(pow_rslt, Form="II", Cell_Type = "PW") # Alternatively, we can use Form="I")