MEDIPS.plotSaturation {MEDIPS} | R Documentation |
The results of the saturation analysis will be visualized by the function.
MEDIPS.plotSaturation(saturationObj = NULL, main="Saturation analysis")
saturationObj |
The saturation results object returned by the MEDIPS.saturationAnalysis function |
main |
The title of the coverage plot. |
The coverage plot will be visualized.
Lukas Chavez
library(MEDIPSData) library(BSgenome.Hsapiens.UCSC.hg19) bam.file.hESCs.Rep1.MeDIP = system.file("extdata", "hESCs.MeDIP.Rep1.chr22.bam", package="MEDIPSData") sr=MEDIPS.saturation(file=bam.file.hESCs.Rep1.MeDIP, BSgenome="BSgenome.Hsapiens.UCSC.hg19", uniq=1e-3, extend=250, shift=0, window_size=100, chr.select="chr22", nit=10, nrit=1, empty_bins=TRUE, rank=FALSE) MEDIPS.plotSaturation(saturationObj = sr, main="Saturation analysis")