PlotHeatmap {IRISFGM}R Documentation

PlotHeatmap

Description

PlotHeatmap

plot heatmap based on bicluster

Usage

PlotHeatmap(object, ...)

.plotHeatmap(
  object = object,
  N.bicluster = c(1, 5),
  show.overlap = FALSE,
  show.annotation = FALSE,
  show.clusters = FALSE
)

## S4 method for signature 'IRISFGM'
PlotHeatmap(
  object = object,
  N.bicluster = c(1, 5),
  show.overlap = FALSE,
  show.annotation = FALSE,
  show.clusters = FALSE
)

Arguments

object

Input IRISFGM object

...

other arguments passed to methods

N.bicluster

Number of biclusters.

show.overlap

Parameter (logic) indicates whether the figure shows the overlap part between two selected biclusters.

show.annotation

Parameter (logic) indicates whether to show annotation (biclusters number and cell cluster labels).

show.clusters

Parameter (logic) indicates whether to show the cell cluster label.

Value

It will generate a heatmap based on selected two FGMs.

Examples

data(example_object)
PlotHeatmap(example_object,
N.bicluster = c(1,20),
show.annotation = TRUE, 
show.cluster =TRUE)


[Package IRISFGM version 1.0.0 Index]