PlotDimension {IRISFGM} | R Documentation |
Generate Umap and it requires user to input cell label index on console window.
PlotDimension(object, ...) .plotDimension(object, reduction = "umap", pt_size = 1, idents = NULL) ## S4 method for signature 'IRISFGM' PlotDimension(object, reduction = "umap", pt_size = 1, idents = NULL)
object |
Input IRIS-FGM Object |
... |
other arguments passed to methods |
reduction |
Choose one of approaches for dimension reduction, including 'pca', 'tsne', 'umap'. |
pt_size |
Point size, default is 0. |
idents |
set current idents. |
generate plot on umap space.
data("example_object") PlotDimension(example_object,idents = "Seurat_r_0.8_k_20")