Summary,GenoGAMDataSet-method {GenoGAM} | R Documentation |
Computing metrics on each tile of the GenoGAMDataSet object. All metrics from the Summary generics group, as well as mean, var, sd, median, mad and IQR are supported.
## S4 method for signature 'GenoGAMDataSet' Summary(x, ..., na.rm = FALSE) ## S4 method for signature 'GenoGAMDataSet' mean(x) ## S4 method for signature 'GenoGAMDataSet,ANY' var(x) ## S4 method for signature 'GenoGAMDataSet' sd(x) ## S4 method for signature 'GenoGAMDataSet' median(x) ## S4 method for signature 'GenoGAMDataSet' mad(x) ## S4 method for signature 'GenoGAMDataSet' IQR(x) ## S4 method for signature 'GenoGAMDataSetList' mean(x) ## S4 method for signature 'GenoGAMDataSetList,ANY' var(x) ## S4 method for signature 'GenoGAMDataSetList' sd(x) ## S4 method for signature 'GenoGAMDataSetList' median(x) ## S4 method for signature 'GenoGAMDataSetList' mad(x) ## S4 method for signature 'GenoGAMDataSetList' IQR(x)
x |
A GenoGAMDataSet object |
... |
Additional arguments |
na.rm |
Should NAs be dropped. Otherwise the result is NA |
A matrix with the specified metric computed per tile per column of the assay data.
Georg Stricker georg.stricker@in.tum.de
ggd <- makeTestGenoGAMDataSet() sum(ggd) min(ggd) max(ggd) mean(ggd) var(ggd) sd(ggd) median(ggd) mad(ggd) IQR(ggd)