ensembl_to_reactome {GeneAccord} | R Documentation |
Map a given ensembl gene id to the reactome pathways that contain this gene.
ensembl_to_reactome(this_ensembl, ensg_reactome_path_map)
this_ensembl |
The ensembl id of a gene. |
ensg_reactome_path_map |
A tibble with all ensembl
id's and their reactome pathways. Can be loaded with
|
As input, an ensembl gene id is given as well as the tibble
'ensg_reactome_path_map'. It can be loaded with
data("ensg_reactome_path_map")
, and contains the
ensembl gene id to reactome pathway mappings. The reactome
pathways are from the lowest level of the hierarchy.
This function returns the reactome pathways for the input gene.
The pathways that contain this gene as a character vector.
Ariane L. Moore
data("ensg_reactome_path_map") ensg_gene <- "ENSG00000134086" ensembl_to_reactome(ensg_gene, ensg_reactome_path_map)