MutationAnnotationFormat_v2.1-class {GenVisR}R Documentation

Class MutationAnnotationFormat_v2.1

Description

An S4 class to represent data in mutation annotation format version 2.1, inherits from the MutationAnnotationFormat_Virtual class.

Usage

MutationAnnotationFormat_v2.1(mafData)

Arguments

mafData

data.table object containing a maf file conforming to the version 2.1 specification.

Slots

position

data.table object containing column names "Chromosome", "Start_Position", "End_Position, "Strand".

mutation

data.table object containing column names "Variant_Classification", "Variant_Type", "Reference_Allele", "Tumor_Seq_Allele1", "Tumor_Seq_Allele2".

sample

data.table object containing columns names "Tumor_Sample_Barcode".

meta

data.table object containing meta data.


[Package GenVisR version 1.24.0 Index]