get_fastqs {GEOfastq} | R Documentation |
First tries to get RNA-Seq fastq files from EBI.
get_fastqs(srp_meta, data_dir, method = c("ftp", "aspera"), max_rate = "1g")
srp_meta |
|
data_dir |
Path to folder that fastq files will be downloaded to. Will be created if doesn't exist. |
method |
One of |
max_rate |
Used when |
Named vector of integer return codes from ascp
or
download.file
. Names are SRR runs.
gsm_name <- 'GSM3926903' srp_meta <- crawl_gsms(gsm_name) data_dir <- tempdir() res <- get_fastqs(srp_meta, data_dir)