computeCoverageMovingWindowOnChr {DEScan2} | R Documentation |
computes the coverage on a chromosomewith a set of moving windows of dimensions minWinWidth:maxWinWidth
computeCoverageMovingWindowOnChr( chrBedGRanges, minWinWidth = 50, maxWinWidth = 1000, binWidth = 50, verbose = TRUE )
chrBedGRanges |
a GRanges to compute the coverage |
minWinWidth |
the minimum width of the window to use for the coverage |
maxWinWidth |
the maximum width of the window to use for the coverage |
binWidth |
the dimension of the bin in base number |
RleList where each element is a window within the Rle of its coverage