SetCC {DAPAR} | R Documentation |
Returns the connected components
SetCC(obj, cc)
obj |
An object (peptides) of class |
cc |
The connected components list |
Samuel Wieczorek
utils::data(Exp1_R25_pept, package='DAPARdata') Xshared <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein_group_IDs", FALSE) Xunique <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein_group_IDs", TRUE) ll.X <- list(matWithSharedPeptides = Xshared, matWithUniquePeptides = Xunique) Exp1_R25_pept <- SetMatAdj(Exp1_R25_pept, ll.X) ll1 <- get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithSharedPeptides) ll2 <- DAPAR::get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithUniquePeptides) cc <- list(allPep = ll1, onlyUniquePep = ll2) Exp1_R25_pept <- SetCC(Exp1_R25_pept, cc)