plotClusterHeatmap {CytoTree} | R Documentation |
Visualization heatmap of cluster data of CYT
plotClusterHeatmap( object, color = colorRampPalette(c("blue", "white", "red"))(100), scale = "row", ... )
object |
An CYT object |
color |
vector. Colors used in heatmap. |
scale |
character. Whether the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none" |
... |
options to pass on to the |
ggplot2 figure
cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree") cyt <- readRDS(file = cyt.file) plotClusterHeatmap(cyt) plotClusterHeatmap(cyt, color = colorRampPalette(c("purple","white","yellow"))(100)) plotClusterHeatmap(cyt, cluster_row = FALSE) plotClusterHeatmap(cyt, cluster_row = FALSE, cluster_col = FALSE)