runDiff {CytoTree}R Documentation

Calculate differential expression markers

Description

Calculating differentially expressed markers

Usage

runDiff(object, branch.id = NULL, branch.id.2 = NULL, verbose = FALSE)

Arguments

object

an CYT object

branch.id

vector. Branch ids use to run differentially expressed markers

branch.id.2

vector. Branch ids use to run differentially expressed markers in compare with branch.id

verbose

logic. Whether to print calculation progress.

Value

An CYT object with cluster.id in meta.data

a data.frame with differential expressed markers

See Also

bulidTree

Examples


cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

DEG.table <- runDiff(cyt)






[Package CytoTree version 1.2.0 Index]