plotTrajHeatmap {CytoTree}R Documentation

Visualization heatmap of intermediate cells of CYT

Description

Visualization heatmap of intermediate cells of CYT

Usage

plotTrajHeatmap(
  object,
  cutoff = 0,
  markers = NULL,
  color = colorRampPalette(c("blue", "white", "red"))(100),
  scale = "row",
  ...
)

Arguments

object

An CYT object

cutoff

numeric. value to identify intermediate state cells

markers

markers to plot on the heatmap

color

vector. Colors used in heatmap.

scale

character. Whether the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"

...

options to pass on to the pheatmap function.

Value

ggplot2 figure


[Package CytoTree version 1.2.0 Index]