plotPieCluster {CytoTree}R Documentation

Visualization pie plot of cluster data of CYT

Description

Visualization pie plot of cluster data of CYT

Usage

plotPieCluster(
  object,
  item.use = c("PC_1", "PC_2"),
  cex.size = 1,
  size.by.cell.number = TRUE,
  main = "2D pie plot of CYT",
  plot.theme = theme_bw()
)

Arguments

object

An CYT object

item.use

character. Items use to 2D plot, axes x and y must be numeric.

cex.size

numeric. Size of the dot

size.by.cell.number

logical. Whether to show size of cell number.

main

character. Title of the plot.

plot.theme

themes from ggplot2

Value

ggplot2 figure

Examples


cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

# Runs only have more than two stages
plotPieCluster(cyt, cex.size = 0.5)

plotPieCluster(cyt, item.use = c("PC_1", "PC_2"), cex.size = 0.5)
plotPieCluster(cyt, item.use = c("PC_2", "PC_3"), cex.size = 0.5)

plotPieCluster(cyt, item.use = c("tSNE_1", "tSNE_2"), cex.size = 20)

plotPieCluster(cyt, item.use = c("DC_1", "DC_2"), cex.size = 0.5)

plotPieCluster(cyt, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1)
plotPieCluster(cyt, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1) 



[Package CytoTree version 1.2.0 Index]