inferAltAllele {AllelicImbalance} | R Documentation |
inference of the alternate allele based on count data
x |
|
return.class |
class of returned object |
allele.source |
'arank' |
verbose |
make function more talkative |
... |
arguments to forward to internal functions |
The inference essentially ranks all alleles and the most expressed allele not declared as reference will be inferred as the alternative allele. At the moment only inference of bi-allelic alternative alleles are available.
Jesper R. Gadin, Lasse Folkersen
#load data data(ASEset) alt <- inferAltAllele(ASEset)