cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data

Documentation for package ‘cleanUpdTSeq’ version 1.30.0

cleanUpdTSeq-package	This package classifies putative polyadenylation sites.
$-method	Class '"PASclassifier"'
$-method	Class '"featureVector"'
$-method	Class '"modelInfo"'
$-method	Class '"naiveBayes"'
$<--method	Class '"PASclassifier"'
$<--method	Class '"featureVector"'
$<--method	Class '"modelInfo"'
$<--method	Class '"naiveBayes"'
BED6WithSeq2GRangesSeq	Covert (extended) BED6 file to a GRanges object
buildClassifier	Build a Naive Bayes Classifier
buildFeatureVector	build Feature Vector_2
classifier	NaiveBayes classifier
cleanUpdTSeq	This package classifies putative polyadenylation sites.
data.NaiveBayes	Training Data
featureVector	Class '"featureVector"'
featureVector-class	Class '"featureVector"'
getContextSequences	Retrieve upstream and downstream sequences
modelInfo	Class '"modelInfo"'
modelInfo-class	Class '"modelInfo"'
naiveBayes	Class '"naiveBayes"'
naiveBayes-class	Class '"naiveBayes"'
PASclassifier	Class '"PASclassifier"'
PASclassifier-class	Class '"PASclassifier"'
predictTestSet	predict authenticity of putative pA sites