cleanUpdTSeq-package | This package classifies putative polyadenylation sites. |
$-method | Class '"PASclassifier"' |
$-method | Class '"featureVector"' |
$-method | Class '"modelInfo"' |
$-method | Class '"naiveBayes"' |
$<--method | Class '"PASclassifier"' |
$<--method | Class '"featureVector"' |
$<--method | Class '"modelInfo"' |
$<--method | Class '"naiveBayes"' |
BED6WithSeq2GRangesSeq | Covert (extended) BED6 file to a GRanges object |
buildClassifier | Build a Naive Bayes Classifier |
buildFeatureVector | build Feature Vector_2 |
classifier | NaiveBayes classifier |
cleanUpdTSeq | This package classifies putative polyadenylation sites. |
data.NaiveBayes | Training Data |
featureVector | Class '"featureVector"' |
featureVector-class | Class '"featureVector"' |
getContextSequences | Retrieve upstream and downstream sequences |
modelInfo | Class '"modelInfo"' |
modelInfo-class | Class '"modelInfo"' |
naiveBayes | Class '"naiveBayes"' |
naiveBayes-class | Class '"naiveBayes"' |
PASclassifier | Class '"PASclassifier"' |
PASclassifier-class | Class '"PASclassifier"' |
predictTestSet | predict authenticity of putative pA sites |