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| addRD | add gene-level rowData derived from transcript level rowRanges |
| ca43k | app to survey 43000 cancer transcriptomes |
| get_ds4841 | return instance of ssrch::DocSet with metadata on 4841 human transcriptome studies in NCBI SRA |
| htx_app | explore SRA metadata |
| htx_load | load a SummarizedExperiment shell for the Human Transcriptome Compendium |
| htx_query_by_study_accession | retrieve 'restfulSE' SummarizedExperiment instance for selected studies in htx compendium |
| htx_query_by_text | subset compendium through keyword lookup |
| HumanTranscriptomeCompendium.colnames | character vector of available samples in HDF cloud assay representation |
| load_bigrnaFiles | obtain listing of contents of BigRNA compendium (salmon runs) |
| load_experTable | obtain listing of experiments and submission date/time in compendium |
| load_studTable | obtain listing of all studies in compendium |
| path_doc4842 | return path to metadata csvs in zip file |
| procExpToGene | acquire a single sample from bigRNA compendium specified by accession and develop gene-level quantifications using tximport |
| tx2gene_gencode27 | generate a data.frame mapping gencode 27 ensembl transcript identifiers to ensembl gene identifiers |
| uniqueAcc_120518 | experiment accessions available in compendium as of may 12 2018 |