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| GSgalgoR-package | GSgalgoR: A bi-objective evolutionary meta-heuristic to identify robust transcriptomic classifiers associated with patient outcome across multiple cancer types. |
| calculate_distance | Functions to calculate distance matrices using cpu computing |
| calculate_distance_euclidean_cpu | Functions to calculate distance matrices using cpu computing |
| calculate_distance_pearson_cpu | Functions to calculate distance matrices using cpu computing |
| calculate_distance_spearman_cpu | Functions to calculate distance matrices using cpu computing |
| calculate_distance_uncentered_cpu | Functions to calculate distance matrices using cpu computing |
| callback_base_report | Print basic info per generation |
| callback_base_return_pop | A base callback function that returns a galgo.Obj |
| callback_default | A default call_back function that does nothing. |
| callback_no_report | Print minimal information to the user about galgo execution. |
| classify_multiple | Classify samples from multiple centroids |
| cluster_algorithm | Wrapper function to perform partition around medioids (PAM) for GalgoR |
| cluster_classify | Distance to centroid classifier function |
| cosine_similarity | Function for calculating the cosine similarity |
| create_centroids | Create Centroids |
| galgo | GSgalgoR main function |
| galgo.Obj | Galgo Object class |
| galgo.Obj-class | Galgo Object class |
| GSgalgoR | GSgalgoR: A bi-objective evolutionary meta-heuristic to identify robust transcriptomic classifiers associated with patient outcome across multiple cancer types. |
| k_centroids | Function to calculate the centroids of different groups (classes) |
| non_dominated_summary | Summary of the non dominated solutions |
| plot_pareto | Plot pareto front from an galgo.Obj |
| select_distance | Functions to calculate distance matrices using cpu computing |
| surv_fitness | Survival fitness function using the Restricted Mean Survival Time (RMST) of each group |
| to_dataframe | Convert galgo.Obj to data.frame |
| to_list | Convert galgo.Obj to list |