NEGGS {yeastGSData} | R Documentation |
These data were supplied as supplementary material, for the paper below, as a data set for negative interactions.
data(NEGGS)
A data frame with 2708746 observations on the following 4 variables.
ORF1
ORF2
LOC1
LOC2
The data are potentially problematic, since not being in the same cellular component does not mean that two proteins will not interact in some particular assay.
Only a very broad grouping of location is given, and one may want to refer to a more recent and potentially more authoratative source.
http://interolog.gersteinlab.org
Annotation Transfer Between Genomes: Protein-Protein Interologs and Protein-DNA Regulogs, H. Yu et al, Genome Research, 1107-1118, 2004.
data(NEGGS) table(NEGGS$LOC1) table(NEGGS$LOC2)