spYCCmeta {yeastCC} | R Documentation |
data.frame instance with metadata on 800 genes
data(spYCCmeta)
A data frame with 800 observations on the following 75 variables.
Process
4-nitroquinoline-N-oxide resistance
ATP synthesis
...Function
(1->6)-beta-glucan synthase subunit
(putative) Glc7p regulatory subunit
...X
Peak
G1
G2/M
M/G1
S
S/G2
Phase.Order
Cluster.Order
ORF
YAL022C
YAL040C
YAL053W
YAL067C
YAR003W
YAR007C
...YPD
AAD10
ACE2
ADA2
ADK2
AFR1
AGA1
AGA2
AGP1
...SGD
AAD10
ACE2
ADA2
ADK2
AFR1
AGA1
AGA2
...YPD.1
YPD
SGD.1
SGD
MIPS
MIPS
n1
n2
Geomean
Absolute
g1
g2
Geomean.1
Absolute.1
Deletion
irrelevant
lethal
undocumented
viable
Known.
Known
New
New
Description
Inhibitor of Cdc28p/Cln1p and Cdc28p/Cln2p complexes involved in cell cycle arrest for mating
1,3-beta-D-glucan synthase
3'-Phosphoadenylylsulfate reductase; part of the sulfate assimilation pathway
...Aggregate.Score
Phase
No..Elements
Most.Relevant.Promoter.Elements
AATAGATGACCCGATTTGGAAAAAGGTAAACAACAATG
ATTTGATTGCCGAAAGAGGCAAAAC GTAAATAGGTTGT
C 156 TCTGCCAGCCAA
C 253 AAAGCCAGCCAT
C 256 TATGCCAGCCAA
C 276 AAGGCCAGCCTC
C 293 TTGACCAGCTAA
...X.1
ATATAGCGACCGAATCAGGAAAAG GTCAACAACGAAG
C 102 CGAGCCAGCATT
C 252 AAGACCAGCATG
C 301 AGTGCCAGCAAA
C 496 GAAGCCAGCACA
C 550 GCGGCCAGCAAC
c 106 attACGCGaaaat
c 112 aaaACGCGagaaa
c 121 ggaACGCGacgc
...X.2
C 125 GCAACCAGCTCT
C 146 CAAGCCAGCCAT
C 195 CGCACCAGCAAC
C 212 TATACCAGCGTT
C 245 TAAACCAGCGCA
C 402 TATGCCAGCAAA
c 112 ttaACGCGatcga
c 115 agtACGCGaaagg
c 123 acaACGCGaacac
c 127 gtgACGCGaaaaa
...X.3
C 307 AAGACCAGCATT
c 163 ctgACGCGcgaaa
c 190 aatACGCGagaaa
c 220 tagACGCGcctta
c 241 cgaACGCGaaact
c 275 aaaACGCGaccgt
c 282 aagACGCGatttt
c 289 attACGCGcatta
c 290 aggACGCGaaact
...X.4
C 200 CAAACCAGCATC
c 117 gtcACGCGaaaaa
c 314 cctACGCGaaagt
c 338 caaACGCGaaaaa
c 359 acgACGCGccttc
c 382 gttACGCGaagtc
c 384 tcaACGCGaattt
c 397 aaaACGCGaaaac
c 440 gtgACGCGcggtt
...X.5
C 306 GGAGCCAGCGCG
c 467 accACGCGaaaag
c 588 gaaACGCGccaaa
w 266 ATAACCAGCAAA
w 383 cagACGCGagaac
w 478 GGAGCCAGCGCG
w401 tatCGCGAAAatt
X.6
C 337 AGAGCCAGCAAG
C 417 TCGGCCAGCAAT
c 501 acaACGCGaaaaa
w 370 gcgACGCGaaaaa
w 447 AGAGCCAGCAAG
X.7
C 388 GGAACCAGCAGA
w 396 GGAACCAGCAGA
Number
SCB
c 103 gacCACGAAAttt
c 105 atgCACGAAAaag
c 106 ctaCACGAAAcac
c 108 tacCACGAAAgta
c 110 ccaCACGAAAaga
c 123 agaCACGAAAtgt
c 127 acaCACGAAAacg
c 181 cagCACGAAAtgg
...SCB.1
c178 tgaCACGAAAaac
c232 gaaCACGAAAtgc
c539 gtaCACGAAAttc
w269 agcCACGAAAtgc
w347 tgaCACGAAAtgt
w541 agtCACGAAAcgc
w601 tgtCACGAAAagt
SCB.2
c330 aacCACGAAAaaa
c582 agtCACGAAAcgc
w467 attCACGAAAtaa
SCB.3
w435 atcCACGAAAatc
X.8
w252 aacCACGAAAagt
Number.1
SCB_d
c 156 gatCGCGAAAttt
c 184 cgaCGCGAAAatg
c 218 cagCGCGAAAagt
c 222 tatCGCGAAAaaa
c 229 tgaCGCGAAAcgc
c 237 tatCGCGAAAcga
c 238 atcCGCGAAAgga
c 283 aagCGCGAAAcaa
....SCB_d.1
c 126 tttCGCGAAActg
c 415 tttCGCGAAAtct
c 566 ttcCGCGAAAaaa
c 592 aggCGCGAAAtac
c 633 aaaCGCGAAAtgt
c242 gaaCGCGAAActt
c297 ctcCGCGAAAaat
c306 tcgCGCGAAAaga
...SCB_d.2
c468 ccaCGCGAAAaga
c508 tttCGCGAAAtct
SCB_d.3
c502 caaCGCGAAAaat
Number.2
MCB
w 126 gcaACGCGTcgc
w 187 caaACGCGTaca
w 207 ctcACGCGTcgg
w 209 attACGCGTtta
w 226 cagACGCGTtgc
w 228 acaACGCGTctt
w 23 acaACGCGTgct
w 267 cccACGCGTagg
...MCB.1
w111 gaaACGCGTtct
w124 ttgACGCGTttc
w128 gtgACGCGTtat
w130 agaACGCGTtct
w131 gcgACGCGTaac
w138 aagACGCGTgaa
w139 attACGCGTtta
w153 ctaACGCGTttt
...MCB.2
w374 taaACGCGTcat
MCB.3
w309 aggACGCGTaaa
Number.3
MCB_d
c 106 attACGCGaaaat
c 109 acaACGCGactgg
c 112 aaaACGCGagaaa
c 115 agtACGCGaaagg
c 117 gtcACGCGaaaaa
c 121 ggaACGCGacgc
c 127 gtgACGCGaaaaa
c 129 acaACGCGcccga
...MCB_d.1
c 123 acaACGCGaacac
c 136 aatACGCGattgg
c 147 gcaACGCGagaga
c 158 tctACGCGcgaag
c 163 ctgACGCGcgaaa
c 176 gcgACGCGgttgt
c 187 agtACGCGatttg
c 189 gaaACGCGggcac
...MCB_d.2
c 112 ttaACGCGatcga
c 220 tagACGCGcctta
c 294 ttcACGCGcttaa
c 382 gttACGCGaagtc
c 477 gcaACGCGcctgg
c 501 acaACGCGaaaaa
c 549 attACGCGcacg
c 557 tgtACGCGcgaac
...MCB_d.3
c 617 gaaACGCGcagta
w 50 gtaACGCGctttt
X.9
c 359 acgACGCGccttc
Number.4
SFF
AATAGATGACCCGATTTGGAAAAAGGTAAACAACAATG
ATTTGATTGCCGAAAGAGGCAAAAC GTAAATAGGTTGT
CAAAACAAACCCAATAAAGAAAATCCAAAATATAGAAC
GTACTTTAACCTGTTTAGGAAAAAG GTAAACAATAACA
TCGAACAATTCTAAAAAGGTAAAT AAAAACAATGGTA
...Number.5
1
2
3
4
ATATAGCGACCGAATCAGGAAAAGGTCAACAACGAAG
Swi5
C 102 CGAGCCAGCATT
C 156 TCTGCCAGCCAA
C 200 CAAACCAGCATC
C 252 AAGACCAGCATG
C 253 AAAGCCAGCCAT
C 256 TATGCCAGCCAA
C 276 AAGGCCAGCCTC
C 293 TTGACCAGCTAA
...Swi5.1
C 125 GCAACCAGCTCT
C 146 CAAGCCAGCCAT
C 195 CGCACCAGCAAC
C 245 TAAACCAGCGCA
C 301 AGTGCCAGCAAA
C 306 GGAGCCAGCGCG
C 307 AAGACCAGCATT
C 402 TATGCCAGCAAA
...Swi5.2
C 212 TATACCAGCGTT
C 337 AGAGCCAGCAAG
c 19 AGAACCAGCTGA
c 320 ACCACCAGCTTA
c 545 ACCACCAGCGTA
c 569 TTCACCAGCGGC
c 642 GAGACCAGCGGA
c 651 ATCACCAGCAAA
...Swi5.3
C 388 GGAACCAGCAGA
C 417 TCGGCCAGCAAT
c 336 TTTACCAGCTCA
c 363 TGCACCAGCATT
c 494 CTGGCCAGCAAG
w 396 GGAACCAGCAGA
Number.6
Swi5e
c 102 CGAGCCAGCATT
c 137 TAGGCCAGCAAA
c 155 ACAACCAGCAGT
c 156 CTAACCAGCAAG
c 16 AGAGCCAGCAGA
c 174 TAAACCAGCATT
c 184 ATGGCCAGCATA
c 200 CAAACCAGCATC
...Swi5e.1
c 222 TTGACCAGCGCC
c 256 TAAACCAGCAAA
c 306 GGAGCCAGCGCG
c 307 AAGACCAGCATT
c 637 GGAGCCAGCGAT
w 265 TAAACCAGCAAT
w 266 ATAACCAGCAAA
w 467 TGAGCCAGCAAT
w 478 GGAGCCAGCGCG
w 536 GAAACCAGCAAC
w 554 ATGGCCAGCACC
Swi5e.2
c 337 AGAGCCAGCAAG
c 417 TCGGCCAGCAAT
c 642 GAGACCAGCGGA
w 447 AGAGCCAGCAAG
Swi5e.3
c 388 GGAACCAGCAGA
w 396 GGAACCAGCAGA
Number.7
ECB
c 185 TTACCCATTTAGGAAA
c 221 TTACCCAATTAGGAAA
c 251 TTTCCCTTTAAGGAAA
c 258 TTTCCCAAAAAGGAAA
c 387 TTTCCCTTTTAGGAAA
c 394 TTACCCACTTAGGAAA
w 154 TTTCCCTTTTAGGAAA
w 177 TTACCCACTTAGGAAA
w 229 TTACCCAGAAAGGAAA
w 378 TTTCCCTAATAGGAAA
w 453 TTTCCCGTTTAGGAAA
w 595 TTTCCCACTAAGGAAA
Number.8
STE12
c 243 CCTTTTTCAGTTTCTATTTTTAACACTGAAACT
w 112 CCCTATTTGGTTGCAATTCAATTCCGTGAAACC
w 119 CCCAATGTAGAAAAGTACATCATATGAAACA
w 218 CCTAATTGGGTAAGTACATGATGAAACA
w 224 CCCAAAAAGGAAATTTACATGTTAAATGAAACC
...MIG1.sites
c 114 AATAGACTGGGG
c 137 TCTATCCTGGGG
c 147 TGAATGCTGGGG
c 165 AATAAAGTGGGG
c 215 TATAATGCGGGG
c 304 AAATCGCCGGGG
c 332 AAATATCTGGGG
c 368 AATTGCGCGGGG
...X.10
c 161 AGTTTGGTGGGG
c 262 AAGATGGTGGGG
c 498 AAAAAACCGGGG
c 499 AAAAATGCGGGG
w 296 TATTCGGCGGGG
w 578 CTTTTGCCGGGG
X.11
taken from the Spellman support web site.
PMID 9843569
data(spYCCmeta) spYCCmeta[1:5,1:6]